Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cdc40Q9DC48 Elf4-202ENSMUST00000114958 6088 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cdc40Q9DC48 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cdc40Q9DC48 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cdc40Q9DC48 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cdc40Q9DC48 Ids-201ENSMUST00000101509 4972 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cdc40Q9DC48 Ptp4a3-201ENSMUST00000053232 3608 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cdc40Q9DC48 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.23
Cdc40Q9DC48 Ap5m1-205ENSMUST00000227431 3757 ntBASIC13.65□□□□□ -0.23
Cdc40Q9DC48 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdc40Q9DC48 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdc40Q9DC48 Tnfsf13-202ENSMUST00000108648 1503 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
Cdc40Q9DC48 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Cdc40Q9DC48 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC13.64□□□□□ -0.23
Cdc40Q9DC48 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
Cdc40Q9DC48 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdc40Q9DC48 Fbxl19-201ENSMUST00000033081 3410 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdc40Q9DC48 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdc40Q9DC48 Plcb3-201ENSMUST00000025912 4201 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdc40Q9DC48 Ikzf1-204ENSMUST00000076700 5163 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdc40Q9DC48 Agbl5-213ENSMUST00000201917 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdc40Q9DC48 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC13.64□□□□□ -0.23
Cdc40Q9DC48 Klc1-203ENSMUST00000120544 2261 ntAPPRIS ALT1 TSL 5 BASIC13.64□□□□□ -0.23
Cdc40Q9DC48 Cdadc1-204ENSMUST00000171683 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdc40Q9DC48 Leng8-201ENSMUST00000037472 5105 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdc40Q9DC48 Gm12008-201ENSMUST00000117791 755 ntBASIC13.64□□□□□ -0.23
Cdc40Q9DC48 Gm11745-201ENSMUST00000121669 448 ntBASIC13.64□□□□□ -0.23
Cdc40Q9DC48 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Cdc40Q9DC48 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC13.64□□□□□ -0.23
Cdc40Q9DC48 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Cdc40Q9DC48 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC13.64□□□□□ -0.23
Cdc40Q9DC48 Gm30684-201ENSMUST00000205632 600 ntTSL 3 BASIC13.64□□□□□ -0.23
Cdc40Q9DC48 Prdx4-201ENSMUST00000026328 990 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdc40Q9DC48 Lce1f-201ENSMUST00000047153 728 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdc40Q9DC48 Tst-201ENSMUST00000058659 1096 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdc40Q9DC48 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdc40Q9DC48 Clec16a-211ENSMUST00000155633 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdc40Q9DC48 Eps8l1-201ENSMUST00000086372 2522 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdc40Q9DC48 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdc40Q9DC48 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Cdc40Q9DC48 Etv3-202ENSMUST00000119109 5309 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdc40Q9DC48 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdc40Q9DC48 Iqgap1-201ENSMUST00000167377 7444 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdc40Q9DC48 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC13.64□□□□□ -0.23
Cdc40Q9DC48 Pcdha11-201ENSMUST00000115658 5359 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdc40Q9DC48 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Cdc40Q9DC48 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Cdc40Q9DC48 Ndufab1-203ENSMUST00000123296 1416 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdc40Q9DC48 Rhpn1-202ENSMUST00000121137 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdc40Q9DC48 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Cdc40Q9DC48 Kpnb1-201ENSMUST00000001479 5894 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdc40Q9DC48 Uhrf1bp1l-201ENSMUST00000020112 6448 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdc40Q9DC48 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Cdc40Q9DC48 Akap17b-201ENSMUST00000051906 6003 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Cdc40Q9DC48 N6amt1-202ENSMUST00000118115 1951 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Cdc40Q9DC48 Gm20708-201ENSMUST00000132298 1780 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
Cdc40Q9DC48 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Cdc40Q9DC48 Irs1-201ENSMUST00000069799 9144 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Cdc40Q9DC48 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
Cdc40Q9DC48 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Cdc40Q9DC48 Tmem40-202ENSMUST00000112946 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Cdc40Q9DC48 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC13.63□□□□□ -0.23
Cdc40Q9DC48 Bcl2l2-204ENSMUST00000172844 498 ntTSL 5 BASIC13.63□□□□□ -0.23
Cdc40Q9DC48 Rac3-201ENSMUST00000018156 1076 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Cdc40Q9DC48 Gm44335-201ENSMUST00000196879 141 ntBASIC13.63□□□□□ -0.23
Cdc40Q9DC48 Gm44297-201ENSMUST00000198304 141 ntBASIC13.63□□□□□ -0.23
Cdc40Q9DC48 Gm44346-201ENSMUST00000198851 141 ntBASIC13.63□□□□□ -0.23
Cdc40Q9DC48 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC13.63□□□□□ -0.23
Cdc40Q9DC48 Sbk2-201ENSMUST00000032598 1139 ntAPPRIS P1 TSL 3 BASIC13.63□□□□□ -0.23
Cdc40Q9DC48 Rgs10-201ENSMUST00000033133 880 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Cdc40Q9DC48 Gapdh-201ENSMUST00000073605 1272 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Cdc40Q9DC48 Mxra8os-201ENSMUST00000097740 687 ntBASIC13.63□□□□□ -0.23
Cdc40Q9DC48 Irgc1-201ENSMUST00000080594 1737 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Cdc40Q9DC48 Lamp2-203ENSMUST00000074913 2184 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Cdc40Q9DC48 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Cdc40Q9DC48 Chtf8-202ENSMUST00000175940 2890 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Cdc40Q9DC48 Hipk3-202ENSMUST00000111124 4125 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Cdc40Q9DC48 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Cdc40Q9DC48 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Cdc40Q9DC48 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Cdc40Q9DC48 Gm13410-201ENSMUST00000117058 1415 ntBASIC13.63□□□□□ -0.23
Cdc40Q9DC48 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Cdc40Q9DC48 Slc22a18-202ENSMUST00000105917 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Cdc40Q9DC48 Lrrc56-201ENSMUST00000047093 2197 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
Cdc40Q9DC48 Rapgef6-205ENSMUST00000108895 1829 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Cdc40Q9DC48 4930429H19Rik-201ENSMUST00000205260 1818 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Cdc40Q9DC48 Adam23-204ENSMUST00000114103 2655 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
Cdc40Q9DC48 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Cdc40Q9DC48 Ralgds-201ENSMUST00000028170 3590 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
Cdc40Q9DC48 Dnajc8-206ENSMUST00000105940 772 ntTSL 5 BASIC13.62□□□□□ -0.23
Cdc40Q9DC48 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Cdc40Q9DC48 Gm15920-201ENSMUST00000118998 402 ntBASIC13.62□□□□□ -0.23
Cdc40Q9DC48 Gm13365-201ENSMUST00000121188 973 ntBASIC13.62□□□□□ -0.23
Cdc40Q9DC48 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC13.62□□□□□ -0.23
Cdc40Q9DC48 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Cdc40Q9DC48 Auts2-212ENSMUST00000178555 309 ntBASIC13.62□□□□□ -0.23
Cdc40Q9DC48 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC13.62□□□□□ -0.23
Cdc40Q9DC48 AC139382.1-201ENSMUST00000221402 498 ntBASIC13.62□□□□□ -0.23
Cdc40Q9DC48 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Cdc40Q9DC48 Gm8396-201ENSMUST00000057361 823 ntBASIC13.62□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 26.5 ms