Protein–RNA interactions for Protein: P49135

Ercc3, General transcription and DNA repair factor IIH helicase subunit XPB, mousemouse

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ercc3P49135 CT030684.1-201ENSMUST00000227292 914 ntBASIC17.49■□□□□ 0.39
Ercc3P49135 Rnf138rt1-201ENSMUST00000059320 1191 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
Ercc3P49135 Apol7d-201ENSMUST00000097699 826 ntTSL 2 BASIC17.49■□□□□ 0.39
Ercc3P49135 Anks1b-214ENSMUST00000182356 7561 ntTSL 5 BASIC17.49■□□□□ 0.39
Ercc3P49135 Ppp2r5b-201ENSMUST00000025695 2742 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Ercc3P49135 Slc6a8-203ENSMUST00000114465 3314 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Ercc3P49135 Ccnf-201ENSMUST00000115390 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Ercc3P49135 Col2a1-201ENSMUST00000023123 5104 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Ercc3P49135 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Ercc3P49135 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Ercc3P49135 Kdm3a-201ENSMUST00000065509 4816 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Ercc3P49135 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Ercc3P49135 Irf8-205ENSMUST00000162001 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Ercc3P49135 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Ercc3P49135 Tex19.2-201ENSMUST00000039146 2046 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ercc3P49135 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC17.48■□□□□ 0.39
Ercc3P49135 Snph-204ENSMUST00000109877 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ercc3P49135 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ercc3P49135 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ercc3P49135 Ggh-201ENSMUST00000098242 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ercc3P49135 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Ercc3P49135 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Ercc3P49135 Efr3b-201ENSMUST00000111178 6547 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ercc3P49135 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Ercc3P49135 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC17.48■□□□□ 0.39
Ercc3P49135 Rian-216ENSMUST00000183215 880 ntTSL 3 BASIC17.48■□□□□ 0.39
Ercc3P49135 Emg1-201ENSMUST00000004379 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ercc3P49135 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ercc3P49135 Nabp1-201ENSMUST00000027279 2838 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ercc3P49135 Rbpms2-202ENSMUST00000169003 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ercc3P49135 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ercc3P49135 AC164565.1-201ENSMUST00000217520 1484 ntBASIC17.48■□□□□ 0.39
Ercc3P49135 Aldh16a1-201ENSMUST00000107815 2685 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Ercc3P49135 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Ercc3P49135 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ercc3P49135 Grin1os-201ENSMUST00000129723 2891 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Ercc3P49135 Gm17108-201ENSMUST00000168625 2877 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Ercc3P49135 Slc25a19-201ENSMUST00000021089 2307 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ercc3P49135 Amz2-202ENSMUST00000092500 2816 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ercc3P49135 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
Ercc3P49135 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC17.48■□□□□ 0.39
Ercc3P49135 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Ercc3P49135 Ager-209ENSMUST00000174496 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ercc3P49135 Rexo4-201ENSMUST00000064244 2281 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ercc3P49135 Gm2109-201ENSMUST00000189326 1409 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Ercc3P49135 Spsb1-203ENSMUST00000105685 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ercc3P49135 Sgk1-202ENSMUST00000092673 2576 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Ercc3P49135 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ercc3P49135 Zfp707-202ENSMUST00000109967 1703 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ercc3P49135 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Ercc3P49135 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
Ercc3P49135 Agpat1-202ENSMUST00000114140 1941 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ercc3P49135 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Ercc3P49135 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ercc3P49135 Sox21-201ENSMUST00000170662 3799 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
Ercc3P49135 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ercc3P49135 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC17.47■□□□□ 0.39
Ercc3P49135 Nek1-202ENSMUST00000120689 5478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ercc3P49135 2410006H16Rik-201ENSMUST00000131787 462 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Ercc3P49135 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ercc3P49135 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Ercc3P49135 Ighv1-15-201ENSMUST00000192077 351 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
Ercc3P49135 Klk2-ps-201ENSMUST00000205342 571 ntBASIC17.47■□□□□ 0.39
Ercc3P49135 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC17.47■□□□□ 0.39
Ercc3P49135 Gm45612-201ENSMUST00000211320 160 ntBASIC17.47■□□□□ 0.39
Ercc3P49135 Prss29-201ENSMUST00000024993 1178 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ercc3P49135 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ercc3P49135 Ercc1-201ENSMUST00000003645 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ercc3P49135 AC126250.1-201ENSMUST00000228343 1768 ntBASIC17.47■□□□□ 0.39
Ercc3P49135 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ercc3P49135 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ercc3P49135 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
Ercc3P49135 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ercc3P49135 Ankrd24-201ENSMUST00000119336 3561 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Ercc3P49135 Mxra8-201ENSMUST00000030947 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ercc3P49135 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ercc3P49135 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ercc3P49135 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ercc3P49135 P2rx3-203ENSMUST00000111616 1315 ntTSL 5 BASIC17.47■□□□□ 0.39
Ercc3P49135 Hsph1-209ENSMUST00000202089 3054 ntTSL 5 BASIC17.46■□□□□ 0.39
Ercc3P49135 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Ercc3P49135 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Ercc3P49135 March4-201ENSMUST00000047786 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Ercc3P49135 Arhgap11a-204ENSMUST00000110949 4458 ntAPPRIS P2 TSL 5 BASIC17.46■□□□□ 0.39
Ercc3P49135 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Ercc3P49135 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
Ercc3P49135 Rnf44-211ENSMUST00000134862 3797 ntTSL 5 BASIC17.46■□□□□ 0.39
Ercc3P49135 Ren1-201ENSMUST00000094556 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Ercc3P49135 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Ercc3P49135 Egfl7-212ENSMUST00000166920 1391 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
Ercc3P49135 Gm13034-201ENSMUST00000121342 3177 ntBASIC17.46■□□□□ 0.39
Ercc3P49135 Hoxaas3-202ENSMUST00000136806 2207 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Ercc3P49135 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Ercc3P49135 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Ercc3P49135 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC17.46■□□□□ 0.39
Ercc3P49135 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC17.46■□□□□ 0.39
Ercc3P49135 Gm27494-201ENSMUST00000184735 189 ntBASIC17.46■□□□□ 0.39
Ercc3P49135 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
Ercc3P49135 Gm44335-201ENSMUST00000196879 141 ntBASIC17.46■□□□□ 0.39
Ercc3P49135 Gm44297-201ENSMUST00000198304 141 ntBASIC17.46■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 29.9 ms