Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
CCDC39Q9UFE4 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC39Q9UFE4 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC20.55■□□□□ 0.88
CCDC39Q9UFE4 REEP1-209ENST00000541910 969 ntTSL 2 BASIC20.55■□□□□ 0.88
CCDC39Q9UFE4 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC20.55■□□□□ 0.88
CCDC39Q9UFE4 AC012306.2-201ENST00000609350 630 ntBASIC20.55■□□□□ 0.88
CCDC39Q9UFE4 AC005363.2-201ENST00000618631 242 ntBASIC20.55■□□□□ 0.88
CCDC39Q9UFE4 AC097493.4-201ENST00000641197 219 ntBASIC20.55■□□□□ 0.88
CCDC39Q9UFE4 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC20.55■□□□□ 0.88
CCDC39Q9UFE4 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC39Q9UFE4 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC20.55■□□□□ 0.88
CCDC39Q9UFE4 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC20.55■□□□□ 0.88
CCDC39Q9UFE4 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC39Q9UFE4 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC39Q9UFE4 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC39Q9UFE4 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC39Q9UFE4 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC39Q9UFE4 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
CCDC39Q9UFE4 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC39Q9UFE4 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC39Q9UFE4 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC39Q9UFE4 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
CCDC39Q9UFE4 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC39Q9UFE4 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
CCDC39Q9UFE4 LINC01126-201ENST00000623515 1646 ntBASIC20.54■□□□□ 0.88
CCDC39Q9UFE4 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC39Q9UFE4 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC39Q9UFE4 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC20.54■□□□□ 0.88
CCDC39Q9UFE4 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC39Q9UFE4 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC20.54■□□□□ 0.88
CCDC39Q9UFE4 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC39Q9UFE4 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC39Q9UFE4 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
CCDC39Q9UFE4 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC20.54■□□□□ 0.88
CCDC39Q9UFE4 AC140113.3-201ENST00000605663 199 ntBASIC20.54■□□□□ 0.88
CCDC39Q9UFE4 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC20.54■□□□□ 0.88
CCDC39Q9UFE4 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC39Q9UFE4 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC39Q9UFE4 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC39Q9UFE4 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC20.54■□□□□ 0.88
CCDC39Q9UFE4 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC20.54■□□□□ 0.88
CCDC39Q9UFE4 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC39Q9UFE4 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC39Q9UFE4 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC39Q9UFE4 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC39Q9UFE4 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC39Q9UFE4 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC39Q9UFE4 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC39Q9UFE4 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC39Q9UFE4 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC20.53■□□□□ 0.88
CCDC39Q9UFE4 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
CCDC39Q9UFE4 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
CCDC39Q9UFE4 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC39Q9UFE4 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC39Q9UFE4 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC20.53■□□□□ 0.88
CCDC39Q9UFE4 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC39Q9UFE4 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC39Q9UFE4 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC39Q9UFE4 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC39Q9UFE4 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
CCDC39Q9UFE4 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC39Q9UFE4 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC39Q9UFE4 CD70-202ENST00000423145 881 ntTSL 2 BASIC20.53■□□□□ 0.88
CCDC39Q9UFE4 AL137013.1-201ENST00000432946 1228 ntBASIC20.53■□□□□ 0.88
CCDC39Q9UFE4 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC20.53■□□□□ 0.88
CCDC39Q9UFE4 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC39Q9UFE4 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC20.53■□□□□ 0.88
CCDC39Q9UFE4 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
CCDC39Q9UFE4 AC010203.1-204ENST00000548782 407 ntBASIC20.53■□□□□ 0.88
CCDC39Q9UFE4 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
CCDC39Q9UFE4 AL031432.5-201ENST00000641059 760 ntBASIC20.53■□□□□ 0.88
CCDC39Q9UFE4 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC20.53■□□□□ 0.88
CCDC39Q9UFE4 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC39Q9UFE4 AL024508.2-201ENST00000607749 1894 ntBASIC20.53■□□□□ 0.88
CCDC39Q9UFE4 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC39Q9UFE4 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC20.53■□□□□ 0.88
CCDC39Q9UFE4 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC39Q9UFE4 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC39Q9UFE4 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC39Q9UFE4 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC39Q9UFE4 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC20.53■□□□□ 0.88
CCDC39Q9UFE4 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC20.53■□□□□ 0.88
CCDC39Q9UFE4 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC39Q9UFE4 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
CCDC39Q9UFE4 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC39Q9UFE4 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC39Q9UFE4 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC39Q9UFE4 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
CCDC39Q9UFE4 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC39Q9UFE4 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC20.52■□□□□ 0.88
CCDC39Q9UFE4 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC39Q9UFE4 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC39Q9UFE4 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC39Q9UFE4 KIRREL3-AS3-201ENST00000404882 831 ntBASIC20.52■□□□□ 0.88
CCDC39Q9UFE4 AC113347.1-201ENST00000413321 391 ntBASIC20.52■□□□□ 0.88
CCDC39Q9UFE4 AC034232.1-201ENST00000506026 1064 ntBASIC20.52■□□□□ 0.88
CCDC39Q9UFE4 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC20.52■□□□□ 0.88
CCDC39Q9UFE4 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC20.52■□□□□ 0.88
CCDC39Q9UFE4 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC20.52■□□□□ 0.88
CCDC39Q9UFE4 AL162727.3-201ENST00000635661 2787 ntBASIC20.52■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms