Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC28BQ9BUN5 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC17.27■□□□□ 0.36
CCDC28BQ9BUN5 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC28BQ9BUN5 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC28BQ9BUN5 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC17.27■□□□□ 0.36
CCDC28BQ9BUN5 ID1-201ENST00000376105 1233 ntBASIC17.27■□□□□ 0.36
CCDC28BQ9BUN5 KRT18P29-201ENST00000397031 1267 ntBASIC17.27■□□□□ 0.36
CCDC28BQ9BUN5 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC17.27■□□□□ 0.36
CCDC28BQ9BUN5 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC28BQ9BUN5 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC17.27■□□□□ 0.36
CCDC28BQ9BUN5 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC17.27■□□□□ 0.36
CCDC28BQ9BUN5 PCDHA1-201ENST00000378133 2726 ntBASIC17.27■□□□□ 0.36
CCDC28BQ9BUN5 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC17.27■□□□□ 0.36
CCDC28BQ9BUN5 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC17.27■□□□□ 0.35
CCDC28BQ9BUN5 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC17.27■□□□□ 0.35
CCDC28BQ9BUN5 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC28BQ9BUN5 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC17.27■□□□□ 0.35
CCDC28BQ9BUN5 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC17.27■□□□□ 0.35
CCDC28BQ9BUN5 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC28BQ9BUN5 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC28BQ9BUN5 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC28BQ9BUN5 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC28BQ9BUN5 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC28BQ9BUN5 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC17.27■□□□□ 0.35
CCDC28BQ9BUN5 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC17.27■□□□□ 0.35
CCDC28BQ9BUN5 AC105020.1-201ENST00000435356 2205 ntBASIC17.27■□□□□ 0.35
CCDC28BQ9BUN5 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC28BQ9BUN5 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC17.27■□□□□ 0.35
CCDC28BQ9BUN5 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
CCDC28BQ9BUN5 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC17.26■□□□□ 0.35
CCDC28BQ9BUN5 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC28BQ9BUN5 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
CCDC28BQ9BUN5 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC28BQ9BUN5 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC28BQ9BUN5 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC28BQ9BUN5 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC28BQ9BUN5 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC28BQ9BUN5 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC17.26■□□□□ 0.35
CCDC28BQ9BUN5 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC17.26■□□□□ 0.35
CCDC28BQ9BUN5 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC28BQ9BUN5 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC28BQ9BUN5 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC28BQ9BUN5 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC28BQ9BUN5 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC28BQ9BUN5 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC17.26■□□□□ 0.35
CCDC28BQ9BUN5 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC28BQ9BUN5 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC28BQ9BUN5 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC17.26■□□□□ 0.35
CCDC28BQ9BUN5 AC092338.2-201ENST00000568827 1415 ntBASIC17.26■□□□□ 0.35
CCDC28BQ9BUN5 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC17.26■□□□□ 0.35
CCDC28BQ9BUN5 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC17.26■□□□□ 0.35
CCDC28BQ9BUN5 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC28BQ9BUN5 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.26■□□□□ 0.35
CCDC28BQ9BUN5 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC17.26■□□□□ 0.35
CCDC28BQ9BUN5 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
CCDC28BQ9BUN5 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC28BQ9BUN5 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC28BQ9BUN5 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
CCDC28BQ9BUN5 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC28BQ9BUN5 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
CCDC28BQ9BUN5 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
CCDC28BQ9BUN5 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC28BQ9BUN5 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC28BQ9BUN5 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
CCDC28BQ9BUN5 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC28BQ9BUN5 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC28BQ9BUN5 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC17.25■□□□□ 0.35
CCDC28BQ9BUN5 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC28BQ9BUN5 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC28BQ9BUN5 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC28BQ9BUN5 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
CCDC28BQ9BUN5 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC28BQ9BUN5 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC28BQ9BUN5 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC28BQ9BUN5 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC28BQ9BUN5 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC28BQ9BUN5 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC28BQ9BUN5 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC28BQ9BUN5 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC28BQ9BUN5 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC28BQ9BUN5 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC17.25■□□□□ 0.35
CCDC28BQ9BUN5 BX088651.1-201ENST00000540551 451 ntBASIC17.25■□□□□ 0.35
CCDC28BQ9BUN5 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC17.25■□□□□ 0.35
CCDC28BQ9BUN5 AC092666.2-201ENST00000613287 246 ntBASIC17.25■□□□□ 0.35
CCDC28BQ9BUN5 DECR2-212ENST00000627716 352 ntTSL 2 BASIC17.25■□□□□ 0.35
CCDC28BQ9BUN5 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
CCDC28BQ9BUN5 AC106886.4-201ENST00000623557 2502 ntBASIC17.25■□□□□ 0.35
CCDC28BQ9BUN5 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC28BQ9BUN5 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
CCDC28BQ9BUN5 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC28BQ9BUN5 UBALD1-205ENST00000590891 2641 ntBASIC17.25■□□□□ 0.35
CCDC28BQ9BUN5 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC28BQ9BUN5 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC28BQ9BUN5 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
CCDC28BQ9BUN5 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC28BQ9BUN5 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
CCDC28BQ9BUN5 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC17.24■□□□□ 0.35
CCDC28BQ9BUN5 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC28BQ9BUN5 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC17.24■□□□□ 0.35
CCDC28BQ9BUN5 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 86.7 ms