Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
NPAS1Q99742 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
NPAS1Q99742 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
NPAS1Q99742 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
NPAS1Q99742 KRT17P6-201ENST00000453795 1220 ntBASIC16.16■□□□□ 0.18
NPAS1Q99742 BET1L-206ENST00000486280 665 ntTSL 3 BASIC16.16■□□□□ 0.18
NPAS1Q99742 AC074051.2-201ENST00000565115 352 ntBASIC16.16■□□□□ 0.18
NPAS1Q99742 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC16.16■□□□□ 0.18
NPAS1Q99742 MNT-208ENST00000575394 606 ntTSL 4 BASIC16.16■□□□□ 0.18
NPAS1Q99742 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
NPAS1Q99742 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC16.16■□□□□ 0.18
NPAS1Q99742 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
NPAS1Q99742 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC16.16■□□□□ 0.18
NPAS1Q99742 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
NPAS1Q99742 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
NPAS1Q99742 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC16.16■□□□□ 0.18
NPAS1Q99742 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC16.16■□□□□ 0.18
NPAS1Q99742 AC010460.3-201ENST00000511359 1579 ntBASIC16.16■□□□□ 0.18
NPAS1Q99742 AC006116.8-202ENST00000587620 1550 ntBASIC16.16■□□□□ 0.18
NPAS1Q99742 NME9-203ENST00000383180 2133 ntTSL 2 BASIC16.16■□□□□ 0.18
NPAS1Q99742 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC16.16■□□□□ 0.18
NPAS1Q99742 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC16.16■□□□□ 0.18
NPAS1Q99742 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
NPAS1Q99742 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
NPAS1Q99742 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
NPAS1Q99742 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC16.15■□□□□ 0.18
NPAS1Q99742 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
NPAS1Q99742 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC16.15■□□□□ 0.18
NPAS1Q99742 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
NPAS1Q99742 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
NPAS1Q99742 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
NPAS1Q99742 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
NPAS1Q99742 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
NPAS1Q99742 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
NPAS1Q99742 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC16.15■□□□□ 0.18
NPAS1Q99742 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
NPAS1Q99742 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC16.15■□□□□ 0.18
NPAS1Q99742 AC125634.1-201ENST00000438758 1403 ntBASIC16.15■□□□□ 0.18
NPAS1Q99742 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC16.15■□□□□ 0.18
NPAS1Q99742 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC16.15■□□□□ 0.18
NPAS1Q99742 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC16.15■□□□□ 0.18
NPAS1Q99742 ABR-204ENST00000543210 1049 ntTSL 2 BASIC16.15■□□□□ 0.18
NPAS1Q99742 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC16.15■□□□□ 0.18
NPAS1Q99742 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC16.15■□□□□ 0.18
NPAS1Q99742 ABR-217ENST00000572441 563 ntTSL 4 BASIC16.15■□□□□ 0.18
NPAS1Q99742 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC16.15■□□□□ 0.18
NPAS1Q99742 AL138831.2-201ENST00000606564 490 ntBASIC16.15■□□□□ 0.18
NPAS1Q99742 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
NPAS1Q99742 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
NPAS1Q99742 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
NPAS1Q99742 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
NPAS1Q99742 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC16.15■□□□□ 0.18
NPAS1Q99742 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
NPAS1Q99742 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
NPAS1Q99742 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
NPAS1Q99742 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
NPAS1Q99742 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC16.15■□□□□ 0.18
NPAS1Q99742 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
NPAS1Q99742 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
NPAS1Q99742 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.18
NPAS1Q99742 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
NPAS1Q99742 NSUN5P1-202ENST00000421140 1535 ntBASIC16.14■□□□□ 0.18
NPAS1Q99742 NSUN5P2-203ENST00000457352 1529 ntBASIC16.14■□□□□ 0.18
NPAS1Q99742 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC16.14■□□□□ 0.17
NPAS1Q99742 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC16.14■□□□□ 0.17
NPAS1Q99742 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC16.14■□□□□ 0.17
NPAS1Q99742 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
NPAS1Q99742 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
NPAS1Q99742 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC16.14■□□□□ 0.17
NPAS1Q99742 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
NPAS1Q99742 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
NPAS1Q99742 AL356309.3-201ENST00000624132 1934 ntBASIC16.14■□□□□ 0.17
NPAS1Q99742 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC16.14■□□□□ 0.17
NPAS1Q99742 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC16.14■□□□□ 0.17
NPAS1Q99742 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
NPAS1Q99742 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
NPAS1Q99742 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
NPAS1Q99742 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
NPAS1Q99742 SKP2-204ENST00000508514 821 ntTSL 3 BASIC16.14■□□□□ 0.17
NPAS1Q99742 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC16.14■□□□□ 0.17
NPAS1Q99742 PNN-202ENST00000553331 656 ntTSL 3 BASIC16.14■□□□□ 0.17
NPAS1Q99742 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC16.14■□□□□ 0.17
NPAS1Q99742 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
NPAS1Q99742 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
NPAS1Q99742 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
NPAS1Q99742 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC16.14■□□□□ 0.17
NPAS1Q99742 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
NPAS1Q99742 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
NPAS1Q99742 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC16.14■□□□□ 0.17
NPAS1Q99742 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC16.14■□□□□ 0.17
NPAS1Q99742 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
NPAS1Q99742 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
NPAS1Q99742 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
NPAS1Q99742 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
NPAS1Q99742 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
NPAS1Q99742 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC16.14■□□□□ 0.17
NPAS1Q99742 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC16.14■□□□□ 0.17
NPAS1Q99742 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
NPAS1Q99742 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
NPAS1Q99742 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms