Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
CLIP3Q96DZ5 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
CLIP3Q96DZ5 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLIP3Q96DZ5 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLIP3Q96DZ5 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLIP3Q96DZ5 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
CLIP3Q96DZ5 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLIP3Q96DZ5 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC17.12■□□□□ 0.33
CLIP3Q96DZ5 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLIP3Q96DZ5 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLIP3Q96DZ5 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC17.12■□□□□ 0.33
CLIP3Q96DZ5 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLIP3Q96DZ5 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLIP3Q96DZ5 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CLIP3Q96DZ5 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CLIP3Q96DZ5 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC17.12■□□□□ 0.33
CLIP3Q96DZ5 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC17.12■□□□□ 0.33
CLIP3Q96DZ5 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC17.12■□□□□ 0.33
CLIP3Q96DZ5 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC17.12■□□□□ 0.33
CLIP3Q96DZ5 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC17.12■□□□□ 0.33
CLIP3Q96DZ5 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC17.12■□□□□ 0.33
CLIP3Q96DZ5 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
CLIP3Q96DZ5 BMF-207ENST00000559701 630 ntTSL 3 BASIC17.12■□□□□ 0.33
CLIP3Q96DZ5 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CLIP3Q96DZ5 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CLIP3Q96DZ5 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CLIP3Q96DZ5 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLIP3Q96DZ5 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLIP3Q96DZ5 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CLIP3Q96DZ5 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLIP3Q96DZ5 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
CLIP3Q96DZ5 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLIP3Q96DZ5 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CLIP3Q96DZ5 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC17.12■□□□□ 0.33
CLIP3Q96DZ5 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLIP3Q96DZ5 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLIP3Q96DZ5 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLIP3Q96DZ5 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC17.11■□□□□ 0.33
CLIP3Q96DZ5 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC17.11■□□□□ 0.33
CLIP3Q96DZ5 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLIP3Q96DZ5 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLIP3Q96DZ5 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC17.11■□□□□ 0.33
CLIP3Q96DZ5 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CLIP3Q96DZ5 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CLIP3Q96DZ5 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC17.11■□□□□ 0.33
CLIP3Q96DZ5 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CLIP3Q96DZ5 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
CLIP3Q96DZ5 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
CLIP3Q96DZ5 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CLIP3Q96DZ5 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CLIP3Q96DZ5 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLIP3Q96DZ5 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLIP3Q96DZ5 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CLIP3Q96DZ5 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CLIP3Q96DZ5 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLIP3Q96DZ5 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLIP3Q96DZ5 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
CLIP3Q96DZ5 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC17.11■□□□□ 0.33
CLIP3Q96DZ5 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC17.11■□□□□ 0.33
CLIP3Q96DZ5 MTCL1P1-201ENST00000446207 792 ntBASIC17.11■□□□□ 0.33
CLIP3Q96DZ5 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC17.11■□□□□ 0.33
CLIP3Q96DZ5 AL591684.3-201ENST00000605187 298 ntBASIC17.11■□□□□ 0.33
CLIP3Q96DZ5 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLIP3Q96DZ5 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLIP3Q96DZ5 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLIP3Q96DZ5 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
CLIP3Q96DZ5 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC17.11■□□□□ 0.33
CLIP3Q96DZ5 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLIP3Q96DZ5 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLIP3Q96DZ5 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLIP3Q96DZ5 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
CLIP3Q96DZ5 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CLIP3Q96DZ5 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLIP3Q96DZ5 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLIP3Q96DZ5 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLIP3Q96DZ5 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
CLIP3Q96DZ5 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
CLIP3Q96DZ5 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CLIP3Q96DZ5 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CLIP3Q96DZ5 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
CLIP3Q96DZ5 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
CLIP3Q96DZ5 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLIP3Q96DZ5 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CLIP3Q96DZ5 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC17.1■□□□□ 0.33
CLIP3Q96DZ5 AC068418.2-201ENST00000577309 3703 ntBASIC17.1■□□□□ 0.33
CLIP3Q96DZ5 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLIP3Q96DZ5 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLIP3Q96DZ5 KIRREL3-AS3-201ENST00000404882 831 ntBASIC17.1■□□□□ 0.33
CLIP3Q96DZ5 THAP5-204ENST00000438865 868 ntTSL 2 BASIC17.1■□□□□ 0.33
CLIP3Q96DZ5 AC079781.3-201ENST00000449110 356 ntBASIC17.1■□□□□ 0.33
CLIP3Q96DZ5 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC17.1■□□□□ 0.33
CLIP3Q96DZ5 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC17.1■□□□□ 0.33
CLIP3Q96DZ5 BNIP3P18-201ENST00000593976 575 ntBASIC17.1■□□□□ 0.33
CLIP3Q96DZ5 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
CLIP3Q96DZ5 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLIP3Q96DZ5 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CLIP3Q96DZ5 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CLIP3Q96DZ5 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CLIP3Q96DZ5 AC124067.4-201ENST00000519691 2379 ntBASIC17.1■□□□□ 0.33
CLIP3Q96DZ5 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms