Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HMGB4Q8WW32 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
HMGB4Q8WW32 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
HMGB4Q8WW32 AC006504.4-201ENST00000592118 1568 ntBASIC17.73■□□□□ 0.43
HMGB4Q8WW32 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC17.73■□□□□ 0.43
HMGB4Q8WW32 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
HMGB4Q8WW32 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HMGB4Q8WW32 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HMGB4Q8WW32 AC148477.5-201ENST00000625164 1645 ntBASIC17.72■□□□□ 0.43
HMGB4Q8WW32 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
HMGB4Q8WW32 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
HMGB4Q8WW32 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
HMGB4Q8WW32 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
HMGB4Q8WW32 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HMGB4Q8WW32 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HMGB4Q8WW32 CRYGEP-201ENST00000412192 528 ntBASIC17.72■□□□□ 0.43
HMGB4Q8WW32 KLF4P1-201ENST00000412782 1185 ntBASIC17.72■□□□□ 0.43
HMGB4Q8WW32 AC211486.1-202ENST00000416371 468 ntBASIC17.72■□□□□ 0.43
HMGB4Q8WW32 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC17.72■□□□□ 0.43
HMGB4Q8WW32 DNAJB3-202ENST00000449667 1266 ntBASIC17.72■□□□□ 0.43
HMGB4Q8WW32 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC17.72■□□□□ 0.43
HMGB4Q8WW32 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC17.72■□□□□ 0.43
HMGB4Q8WW32 AC211476.1-201ENST00000503899 468 ntBASIC17.72■□□□□ 0.43
HMGB4Q8WW32 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
HMGB4Q8WW32 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC17.72■□□□□ 0.43
HMGB4Q8WW32 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC17.72■□□□□ 0.43
HMGB4Q8WW32 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC17.72■□□□□ 0.43
HMGB4Q8WW32 AL355385.1-201ENST00000606123 409 ntBASIC17.72■□□□□ 0.43
HMGB4Q8WW32 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC17.72■□□□□ 0.43
HMGB4Q8WW32 AC004706.3-202ENST00000621574 984 ntBASIC17.72■□□□□ 0.43
HMGB4Q8WW32 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HMGB4Q8WW32 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HMGB4Q8WW32 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC17.72■□□□□ 0.43
HMGB4Q8WW32 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
HMGB4Q8WW32 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HMGB4Q8WW32 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HMGB4Q8WW32 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HMGB4Q8WW32 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HMGB4Q8WW32 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
HMGB4Q8WW32 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HMGB4Q8WW32 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
HMGB4Q8WW32 AL353593.2-201ENST00000602529 1483 ntBASIC17.71■□□□□ 0.43
HMGB4Q8WW32 AC132938.5-201ENST00000624980 1813 ntBASIC17.71■□□□□ 0.43
HMGB4Q8WW32 AC073592.3-201ENST00000625118 1834 ntBASIC17.71■□□□□ 0.43
HMGB4Q8WW32 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HMGB4Q8WW32 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC17.71■□□□□ 0.43
HMGB4Q8WW32 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC17.71■□□□□ 0.43
HMGB4Q8WW32 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC17.71■□□□□ 0.43
HMGB4Q8WW32 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC17.71■□□□□ 0.43
HMGB4Q8WW32 AC027796.2-201ENST00000575326 344 ntBASIC17.71■□□□□ 0.43
HMGB4Q8WW32 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HMGB4Q8WW32 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
HMGB4Q8WW32 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC17.71■□□□□ 0.43
HMGB4Q8WW32 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HMGB4Q8WW32 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HMGB4Q8WW32 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
HMGB4Q8WW32 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
HMGB4Q8WW32 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HMGB4Q8WW32 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HMGB4Q8WW32 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HMGB4Q8WW32 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC17.71■□□□□ 0.43
HMGB4Q8WW32 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
HMGB4Q8WW32 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC17.71■□□□□ 0.42
HMGB4Q8WW32 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
HMGB4Q8WW32 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.42
HMGB4Q8WW32 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.42
HMGB4Q8WW32 AL049757.1-201ENST00000616842 1596 ntBASIC17.7■□□□□ 0.42
HMGB4Q8WW32 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGB4Q8WW32 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC17.7■□□□□ 0.42
HMGB4Q8WW32 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HMGB4Q8WW32 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGB4Q8WW32 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGB4Q8WW32 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGB4Q8WW32 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGB4Q8WW32 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
HMGB4Q8WW32 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC17.7■□□□□ 0.42
HMGB4Q8WW32 HMGN1P19-201ENST00000436976 333 ntBASIC17.7■□□□□ 0.42
HMGB4Q8WW32 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC17.7■□□□□ 0.42
HMGB4Q8WW32 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGB4Q8WW32 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC17.7■□□□□ 0.42
HMGB4Q8WW32 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HMGB4Q8WW32 AL596442.2-201ENST00000610240 980 ntBASIC17.7■□□□□ 0.42
HMGB4Q8WW32 FUT8-AS1-201ENST00000621019 1521 ntBASIC17.7■□□□□ 0.42
HMGB4Q8WW32 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC17.7■□□□□ 0.42
HMGB4Q8WW32 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
HMGB4Q8WW32 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGB4Q8WW32 NCF1C-201ENST00000438382 1427 ntBASIC17.7■□□□□ 0.42
HMGB4Q8WW32 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGB4Q8WW32 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGB4Q8WW32 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGB4Q8WW32 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGB4Q8WW32 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC17.7■□□□□ 0.42
HMGB4Q8WW32 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
HMGB4Q8WW32 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC17.69■□□□□ 0.42
HMGB4Q8WW32 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HMGB4Q8WW32 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
HMGB4Q8WW32 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC17.69■□□□□ 0.42
HMGB4Q8WW32 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HMGB4Q8WW32 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
HMGB4Q8WW32 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms