Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CSMD3Q7Z407 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC12.23□□□□□ -0.45
CSMD3Q7Z407 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
CSMD3Q7Z407 AP002414.1-201ENST00000391405 1147 ntBASIC12.23□□□□□ -0.45
CSMD3Q7Z407 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC12.23□□□□□ -0.45
CSMD3Q7Z407 AC004449.1-201ENST00000564240 433 ntBASIC12.23□□□□□ -0.45
CSMD3Q7Z407 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CSMD3Q7Z407 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC12.23□□□□□ -0.45
CSMD3Q7Z407 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
CSMD3Q7Z407 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
CSMD3Q7Z407 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
CSMD3Q7Z407 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
CSMD3Q7Z407 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CSMD3Q7Z407 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
CSMD3Q7Z407 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
CSMD3Q7Z407 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC12.22□□□□□ -0.45
CSMD3Q7Z407 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
CSMD3Q7Z407 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
CSMD3Q7Z407 FZD10-202ENST00000539839 3282 ntBASIC12.22□□□□□ -0.45
CSMD3Q7Z407 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CSMD3Q7Z407 AL627223.1-201ENST00000416693 442 ntBASIC12.22□□□□□ -0.45
CSMD3Q7Z407 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
CSMD3Q7Z407 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC12.22□□□□□ -0.45
CSMD3Q7Z407 CRB3P1-201ENST00000449338 276 ntBASIC12.22□□□□□ -0.45
CSMD3Q7Z407 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC12.22□□□□□ -0.45
CSMD3Q7Z407 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC12.22□□□□□ -0.45
CSMD3Q7Z407 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC12.22□□□□□ -0.45
CSMD3Q7Z407 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CSMD3Q7Z407 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
CSMD3Q7Z407 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CSMD3Q7Z407 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC12.22□□□□□ -0.45
CSMD3Q7Z407 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CSMD3Q7Z407 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CSMD3Q7Z407 GNAS-203ENST00000306120 1878 ntBASIC12.22□□□□□ -0.45
CSMD3Q7Z407 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CSMD3Q7Z407 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC12.22□□□□□ -0.45
CSMD3Q7Z407 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
CSMD3Q7Z407 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
CSMD3Q7Z407 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CSMD3Q7Z407 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC12.22□□□□□ -0.45
CSMD3Q7Z407 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC12.22□□□□□ -0.45
CSMD3Q7Z407 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC12.22□□□□□ -0.45
CSMD3Q7Z407 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CSMD3Q7Z407 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC12.22□□□□□ -0.45
CSMD3Q7Z407 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC12.22□□□□□ -0.45
CSMD3Q7Z407 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC12.22□□□□□ -0.45
CSMD3Q7Z407 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
CSMD3Q7Z407 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CSMD3Q7Z407 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC12.22□□□□□ -0.45
CSMD3Q7Z407 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC12.22□□□□□ -0.45
CSMD3Q7Z407 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC12.22□□□□□ -0.45
CSMD3Q7Z407 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
CSMD3Q7Z407 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC12.22□□□□□ -0.45
CSMD3Q7Z407 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CSMD3Q7Z407 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
CSMD3Q7Z407 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CSMD3Q7Z407 RPS15P9-201ENST00000494093 319 ntBASIC12.22□□□□□ -0.45
CSMD3Q7Z407 RNA5SP421-201ENST00000516864 134 ntBASIC12.22□□□□□ -0.45
CSMD3Q7Z407 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC12.22□□□□□ -0.45
CSMD3Q7Z407 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
CSMD3Q7Z407 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
CSMD3Q7Z407 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
CSMD3Q7Z407 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC12.21□□□□□ -0.45
CSMD3Q7Z407 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC12.21□□□□□ -0.45
CSMD3Q7Z407 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
CSMD3Q7Z407 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
CSMD3Q7Z407 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
CSMD3Q7Z407 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC12.21□□□□□ -0.45
CSMD3Q7Z407 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
CSMD3Q7Z407 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC12.21□□□□□ -0.45
CSMD3Q7Z407 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC12.21□□□□□ -0.45
CSMD3Q7Z407 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC12.21□□□□□ -0.45
CSMD3Q7Z407 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
CSMD3Q7Z407 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC12.21□□□□□ -0.45
CSMD3Q7Z407 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC12.21□□□□□ -0.45
CSMD3Q7Z407 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC12.21□□□□□ -0.45
CSMD3Q7Z407 HARS-201ENST00000307633 1780 ntTSL 2 BASIC12.21□□□□□ -0.45
CSMD3Q7Z407 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC12.21□□□□□ -0.45
CSMD3Q7Z407 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
CSMD3Q7Z407 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
CSMD3Q7Z407 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
CSMD3Q7Z407 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC12.21□□□□□ -0.45
CSMD3Q7Z407 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC12.21□□□□□ -0.45
CSMD3Q7Z407 GID4-202ENST00000376345 1391 ntTSL 3 BASIC12.21□□□□□ -0.45
CSMD3Q7Z407 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
CSMD3Q7Z407 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
CSMD3Q7Z407 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
CSMD3Q7Z407 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
CSMD3Q7Z407 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
CSMD3Q7Z407 WRB-204ENST00000398753 699 ntTSL 3 BASIC12.21□□□□□ -0.45
CSMD3Q7Z407 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC12.21□□□□□ -0.45
CSMD3Q7Z407 AC019129.2-201ENST00000609837 1235 ntBASIC12.21□□□□□ -0.45
CSMD3Q7Z407 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
CSMD3Q7Z407 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
CSMD3Q7Z407 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.46
CSMD3Q7Z407 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
CSMD3Q7Z407 AC025678.2-201ENST00000562061 970 ntBASIC12.21□□□□□ -0.46
CSMD3Q7Z407 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC12.21□□□□□ -0.46
CSMD3Q7Z407 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.46
CSMD3Q7Z407 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms