Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
Trim47Q8C0E3 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Trim47Q8C0E3 Unc93b1-203ENSMUST00000162708 2266 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim47Q8C0E3 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trim47Q8C0E3 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trim47Q8C0E3 Nyx-201ENSMUST00000050434 5183 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trim47Q8C0E3 AC174678.1-201ENSMUST00000228007 2749 ntBASIC16.41■□□□□ 0.22
Trim47Q8C0E3 Pld5-202ENSMUST00000111166 1370 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Trim47Q8C0E3 Abl1-201ENSMUST00000028190 5794 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trim47Q8C0E3 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Trim47Q8C0E3 Spock1-203ENSMUST00000185905 2794 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Trim47Q8C0E3 Mxra8-201ENSMUST00000030947 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trim47Q8C0E3 Ap1g1-202ENSMUST00000093157 6899 ntAPPRIS P3 TSL 5 BASIC16.41■□□□□ 0.22
Trim47Q8C0E3 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC16.41■□□□□ 0.22
Trim47Q8C0E3 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC16.41■□□□□ 0.22
Trim47Q8C0E3 Cyb561d2-205ENSMUST00000195235 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trim47Q8C0E3 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trim47Q8C0E3 5830408C22Rik-201ENSMUST00000210072 1115 ntTSL 5 BASIC16.41■□□□□ 0.22
Trim47Q8C0E3 AC139382.1-201ENSMUST00000221402 498 ntBASIC16.41■□□□□ 0.22
Trim47Q8C0E3 AC140397.2-201ENSMUST00000224213 834 ntBASIC16.41■□□□□ 0.22
Trim47Q8C0E3 Caly-201ENSMUST00000026541 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trim47Q8C0E3 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Trim47Q8C0E3 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC16.41■□□□□ 0.22
Trim47Q8C0E3 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trim47Q8C0E3 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Trim47Q8C0E3 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trim47Q8C0E3 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trim47Q8C0E3 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC16.41■□□□□ 0.22
Trim47Q8C0E3 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Trim47Q8C0E3 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trim47Q8C0E3 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trim47Q8C0E3 9130019P16Rik-202ENSMUST00000145111 4486 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Trim47Q8C0E3 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim47Q8C0E3 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC16.4■□□□□ 0.22
Trim47Q8C0E3 Gm26666-201ENSMUST00000180763 2461 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Trim47Q8C0E3 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim47Q8C0E3 Tubb3-201ENSMUST00000071134 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim47Q8C0E3 Gm5421-201ENSMUST00000181698 2354 ntBASIC16.4■□□□□ 0.22
Trim47Q8C0E3 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim47Q8C0E3 Romo1-203ENSMUST00000109598 362 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Trim47Q8C0E3 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Trim47Q8C0E3 AC131710.1-201ENSMUST00000228336 990 ntBASIC16.4■□□□□ 0.22
Trim47Q8C0E3 Rps10-201ENSMUST00000025052 519 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Trim47Q8C0E3 Nsmce3-201ENSMUST00000094331 5946 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
Trim47Q8C0E3 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim47Q8C0E3 St3gal3-202ENSMUST00000097912 2143 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Trim47Q8C0E3 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Trim47Q8C0E3 Gm10584-201ENSMUST00000207036 2628 ntBASIC16.4■□□□□ 0.22
Trim47Q8C0E3 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC16.4■□□□□ 0.22
Trim47Q8C0E3 Map3k12-207ENSMUST00000169377 4210 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim47Q8C0E3 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim47Q8C0E3 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.22
Trim47Q8C0E3 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim47Q8C0E3 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
Trim47Q8C0E3 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim47Q8C0E3 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim47Q8C0E3 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim47Q8C0E3 Slk-202ENSMUST00000051691 4239 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim47Q8C0E3 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC16.39■□□□□ 0.21
Trim47Q8C0E3 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim47Q8C0E3 P2ry2-206ENSMUST00000208340 2693 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim47Q8C0E3 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Trim47Q8C0E3 4930474N05Rik-203ENSMUST00000226305 2313 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
Trim47Q8C0E3 Ipo8-201ENSMUST00000048418 5360 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim47Q8C0E3 BC026585-201ENSMUST00000046743 1618 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim47Q8C0E3 Tnfrsf13b-202ENSMUST00000101103 750 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim47Q8C0E3 Gm13464-201ENSMUST00000119418 935 ntBASIC16.39■□□□□ 0.21
Trim47Q8C0E3 Mvk-206ENSMUST00000137167 1049 ntTSL 2 BASIC16.39■□□□□ 0.21
Trim47Q8C0E3 Tmem33-206ENSMUST00000162543 664 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Trim47Q8C0E3 Tmem217-202ENSMUST00000168339 812 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim47Q8C0E3 9130230N09Rik-201ENSMUST00000174568 663 ntTSL 3 BASIC16.39■□□□□ 0.21
Trim47Q8C0E3 Nckipsd-206ENSMUST00000195323 467 ntTSL 3 BASIC16.39■□□□□ 0.21
Trim47Q8C0E3 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC16.39■□□□□ 0.21
Trim47Q8C0E3 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC16.39■□□□□ 0.21
Trim47Q8C0E3 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim47Q8C0E3 Tox2-202ENSMUST00000109428 2947 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Trim47Q8C0E3 Faf1-201ENSMUST00000102724 4468 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim47Q8C0E3 Kit-204ENSMUST00000144270 5241 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim47Q8C0E3 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim47Q8C0E3 Nr3c2-203ENSMUST00000109912 5675 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim47Q8C0E3 Psmc5-201ENSMUST00000021049 1316 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim47Q8C0E3 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Trim47Q8C0E3 Slit1-203ENSMUST00000169141 5673 ntTSL 5 BASIC16.39■□□□□ 0.21
Trim47Q8C0E3 Il9r-202ENSMUST00000128311 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim47Q8C0E3 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim47Q8C0E3 Snx18-201ENSMUST00000109241 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim47Q8C0E3 Meis2-204ENSMUST00000110906 3229 ntTSL 2 BASIC16.38■□□□□ 0.21
Trim47Q8C0E3 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim47Q8C0E3 Akt2-ps-201ENSMUST00000120718 1449 ntBASIC16.38■□□□□ 0.21
Trim47Q8C0E3 Casp8ap2-201ENSMUST00000029950 6799 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim47Q8C0E3 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim47Q8C0E3 Kdr-201ENSMUST00000113516 5924 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim47Q8C0E3 Hist1h3e-201ENSMUST00000105107 836 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
Trim47Q8C0E3 Tpt1-ps6-201ENSMUST00000121768 523 ntBASIC16.38■□□□□ 0.21
Trim47Q8C0E3 Hsf4-207ENSMUST00000174837 1251 ntTSL 5 BASIC16.38■□□□□ 0.21
Trim47Q8C0E3 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Trim47Q8C0E3 Gm38225-201ENSMUST00000194001 393 ntBASIC16.38■□□□□ 0.21
Trim47Q8C0E3 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC16.38■□□□□ 0.21
Trim47Q8C0E3 Gpd2-202ENSMUST00000112618 5759 ntTSL 5 BASIC16.38■□□□□ 0.21
Trim47Q8C0E3 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 33.2 ms