Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 KLF2P3-201ENST00000451977 1087 ntBASIC18.65■□□□□ 0.58
CHD9Q3L8U1 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC18.65■□□□□ 0.58
CHD9Q3L8U1 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC18.65■□□□□ 0.58
CHD9Q3L8U1 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC18.65■□□□□ 0.58
CHD9Q3L8U1 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
CHD9Q3L8U1 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHD9Q3L8U1 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC18.65■□□□□ 0.58
CHD9Q3L8U1 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHD9Q3L8U1 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHD9Q3L8U1 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CHD9Q3L8U1 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHD9Q3L8U1 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC18.64■□□□□ 0.58
CHD9Q3L8U1 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.58
CHD9Q3L8U1 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.58
CHD9Q3L8U1 NABP1-203ENST00000409510 843 ntTSL 5 BASIC18.64■□□□□ 0.58
CHD9Q3L8U1 SERBP1P5-201ENST00000510079 1181 ntBASIC18.64■□□□□ 0.58
CHD9Q3L8U1 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC18.64■□□□□ 0.58
CHD9Q3L8U1 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC18.64■□□□□ 0.58
CHD9Q3L8U1 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.58
CHD9Q3L8U1 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.58
CHD9Q3L8U1 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC18.64■□□□□ 0.57
CHD9Q3L8U1 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CHD9Q3L8U1 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
CHD9Q3L8U1 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC18.64■□□□□ 0.57
CHD9Q3L8U1 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC18.64■□□□□ 0.57
CHD9Q3L8U1 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC18.64■□□□□ 0.57
CHD9Q3L8U1 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC18.64■□□□□ 0.57
CHD9Q3L8U1 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC18.64■□□□□ 0.57
CHD9Q3L8U1 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC18.64■□□□□ 0.57
CHD9Q3L8U1 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC18.64■□□□□ 0.57
CHD9Q3L8U1 STK25P1-201ENST00000585406 838 ntBASIC18.64■□□□□ 0.57
CHD9Q3L8U1 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC18.64■□□□□ 0.57
CHD9Q3L8U1 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
CHD9Q3L8U1 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
CHD9Q3L8U1 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CHD9Q3L8U1 GMCL1P1-201ENST00000463439 1581 ntBASIC18.64■□□□□ 0.57
CHD9Q3L8U1 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
CHD9Q3L8U1 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CHD9Q3L8U1 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
CHD9Q3L8U1 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CHD9Q3L8U1 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
CHD9Q3L8U1 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC18.64■□□□□ 0.57
CHD9Q3L8U1 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC18.64■□□□□ 0.57
CHD9Q3L8U1 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
CHD9Q3L8U1 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
CHD9Q3L8U1 AC126763.1-201ENST00000552015 2118 ntBASIC18.63■□□□□ 0.57
CHD9Q3L8U1 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHD9Q3L8U1 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHD9Q3L8U1 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC18.63■□□□□ 0.57
CHD9Q3L8U1 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CHD9Q3L8U1 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHD9Q3L8U1 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CHD9Q3L8U1 AL355306.1-201ENST00000415580 579 ntBASIC18.63■□□□□ 0.57
CHD9Q3L8U1 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC18.63■□□□□ 0.57
CHD9Q3L8U1 AC067863.1-201ENST00000494933 530 ntBASIC18.63■□□□□ 0.57
CHD9Q3L8U1 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC18.63■□□□□ 0.57
CHD9Q3L8U1 SERF2-217ENST00000630046 862 ntTSL 5 BASIC18.63■□□□□ 0.57
CHD9Q3L8U1 AC097637.2-201ENST00000624096 1997 ntBASIC18.63■□□□□ 0.57
CHD9Q3L8U1 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHD9Q3L8U1 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHD9Q3L8U1 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
CHD9Q3L8U1 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHD9Q3L8U1 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHD9Q3L8U1 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHD9Q3L8U1 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CHD9Q3L8U1 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHD9Q3L8U1 HARS-201ENST00000307633 1780 ntTSL 2 BASIC18.63■□□□□ 0.57
CHD9Q3L8U1 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHD9Q3L8U1 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC18.63■□□□□ 0.57
CHD9Q3L8U1 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CHD9Q3L8U1 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CHD9Q3L8U1 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CHD9Q3L8U1 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHD9Q3L8U1 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHD9Q3L8U1 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC18.62■□□□□ 0.57
CHD9Q3L8U1 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHD9Q3L8U1 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
CHD9Q3L8U1 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC18.62■□□□□ 0.57
CHD9Q3L8U1 HNRNPA1P40-201ENST00000426371 1278 ntBASIC18.62■□□□□ 0.57
CHD9Q3L8U1 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHD9Q3L8U1 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC18.62■□□□□ 0.57
CHD9Q3L8U1 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CHD9Q3L8U1 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHD9Q3L8U1 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHD9Q3L8U1 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
CHD9Q3L8U1 AC009949.1-201ENST00000623048 1830 ntBASIC18.62■□□□□ 0.57
CHD9Q3L8U1 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHD9Q3L8U1 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
CHD9Q3L8U1 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHD9Q3L8U1 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
CHD9Q3L8U1 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHD9Q3L8U1 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHD9Q3L8U1 GATB-205ENST00000508611 605 ntTSL 2 BASIC18.62■□□□□ 0.57
CHD9Q3L8U1 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CHD9Q3L8U1 TDG-209ENST00000544861 1387 ntTSL 2 BASIC18.62■□□□□ 0.57
CHD9Q3L8U1 AC005332.7-201ENST00000614046 2005 ntBASIC18.62■□□□□ 0.57
CHD9Q3L8U1 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CHD9Q3L8U1 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHD9Q3L8U1 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
CHD9Q3L8U1 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms