Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Gm13689-201ENSMUST00000119360 685 ntBASIC16.35■□□□□ 0.21
Col11a1Q61245 AC154171.1-201ENSMUST00000224610 643 ntBASIC16.35■□□□□ 0.21
Col11a1Q61245 Tex26-201ENSMUST00000031667 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col11a1Q61245 Cmc2-201ENSMUST00000078589 523 ntTSL 2 BASIC16.35■□□□□ 0.21
Col11a1Q61245 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col11a1Q61245 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Col11a1Q61245 Trim8-201ENSMUST00000026008 3230 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col11a1Q61245 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col11a1Q61245 Gm45351-201ENSMUST00000210683 2545 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Col11a1Q61245 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Col11a1Q61245 Pdlim7-201ENSMUST00000046246 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col11a1Q61245 Rps8-201ENSMUST00000102696 860 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col11a1Q61245 3000002C10Rik-202ENSMUST00000133495 1008 ntBASIC16.34■□□□□ 0.21
Col11a1Q61245 Pyy-204ENSMUST00000177304 551 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
Col11a1Q61245 Gm33460-201ENSMUST00000212286 536 ntTSL 5 BASIC16.34■□□□□ 0.21
Col11a1Q61245 Txn1-201ENSMUST00000030051 1051 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col11a1Q61245 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col11a1Q61245 Clec2h-201ENSMUST00000032518 2160 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col11a1Q61245 Apbb1-212ENSMUST00000189072 2085 ntTSL 5 BASIC16.34■□□□□ 0.21
Col11a1Q61245 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col11a1Q61245 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col11a1Q61245 Tssk4-202ENSMUST00000164809 1686 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Col11a1Q61245 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC16.33■□□□□ 0.21
Col11a1Q61245 Tmem254b-202ENSMUST00000100806 1108 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
Col11a1Q61245 Tmem254a-201ENSMUST00000100811 1108 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
Col11a1Q61245 Car15-201ENSMUST00000118960 1283 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Col11a1Q61245 H60b-202ENSMUST00000131558 1080 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
Col11a1Q61245 3110053B16Rik-204ENSMUST00000145605 575 ntBASIC16.33■□□□□ 0.21
Col11a1Q61245 Pmepa1os-201ENSMUST00000150185 680 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
Col11a1Q61245 Gm15429-201ENSMUST00000151268 798 ntBASIC16.33■□□□□ 0.21
Col11a1Q61245 Oprm1-229ENSMUST00000152674 1179 ntTSL 3 BASIC16.33■□□□□ 0.21
Col11a1Q61245 Grp-202ENSMUST00000173530 617 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.21
Col11a1Q61245 Gm38230-201ENSMUST00000193572 1159 ntBASIC16.33■□□□□ 0.21
Col11a1Q61245 Dera-204ENSMUST00000203216 688 ntTSL 5 BASIC16.33■□□□□ 0.21
Col11a1Q61245 Gm18054-201ENSMUST00000207539 555 ntBASIC16.33■□□□□ 0.21
Col11a1Q61245 Tmem54-202ENSMUST00000030577 988 ntAPPRIS ALT2 TSL 3 BASIC16.33■□□□□ 0.21
Col11a1Q61245 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.21
Col11a1Q61245 Slco3a1-201ENSMUST00000026897 4589 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.21
Col11a1Q61245 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
Col11a1Q61245 Kir3dl1-202ENSMUST00000113105 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col11a1Q61245 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col11a1Q61245 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col11a1Q61245 Gm11978-202ENSMUST00000127510 1303 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Col11a1Q61245 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC16.33■□□□□ 0.2
Col11a1Q61245 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col11a1Q61245 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col11a1Q61245 Dlk1-202ENSMUST00000109841 879 ntTSL 5 BASIC16.33■□□□□ 0.2
Col11a1Q61245 Gm15376-201ENSMUST00000122258 783 ntBASIC16.33■□□□□ 0.2
Col11a1Q61245 Gm42442-201ENSMUST00000197951 1133 ntBASIC16.33■□□□□ 0.2
Col11a1Q61245 Gm6983-201ENSMUST00000214912 628 ntBASIC16.33■□□□□ 0.2
Col11a1Q61245 AC192088.1-201ENSMUST00000227561 301 ntBASIC16.33■□□□□ 0.2
Col11a1Q61245 Eaf2-201ENSMUST00000023537 849 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
Col11a1Q61245 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col11a1Q61245 Gm15557-201ENSMUST00000109629 1380 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Col11a1Q61245 Dmgdh-201ENSMUST00000048001 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col11a1Q61245 Zufsp-205ENSMUST00000218880 2005 ntTSL 5 BASIC16.32■□□□□ 0.2
Col11a1Q61245 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Col11a1Q61245 Lrriq4-202ENSMUST00000108267 2387 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col11a1Q61245 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC16.32■□□□□ 0.2
Col11a1Q61245 Usp51-201ENSMUST00000095755 2204 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col11a1Q61245 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col11a1Q61245 Sgce-205ENSMUST00000115579 1696 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col11a1Q61245 Ash2l-201ENSMUST00000068892 3307 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col11a1Q61245 Leng8-202ENSMUST00000117274 874 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Col11a1Q61245 Pdpn-202ENSMUST00000119654 762 ntAPPRIS ALT2 TSL 3 BASIC16.32■□□□□ 0.2
Col11a1Q61245 Gm27572-201ENSMUST00000183702 255 ntBASIC16.32■□□□□ 0.2
Col11a1Q61245 Gm27486-201ENSMUST00000184923 80 ntBASIC16.32■□□□□ 0.2
Col11a1Q61245 Gm8598-201ENSMUST00000221184 836 ntBASIC16.32■□□□□ 0.2
Col11a1Q61245 Nap1l1-203ENSMUST00000217908 1350 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col11a1Q61245 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col11a1Q61245 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
Col11a1Q61245 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col11a1Q61245 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Col11a1Q61245 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC16.31■□□□□ 0.2
Col11a1Q61245 Snx29-207ENSMUST00000180792 2667 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Col11a1Q61245 Fzr1-202ENSMUST00000118812 1215 ntTSL 5 BASIC16.31■□□□□ 0.2
Col11a1Q61245 Gm12416-201ENSMUST00000120911 1008 ntBASIC16.31■□□□□ 0.2
Col11a1Q61245 Gm11684-201ENSMUST00000144975 757 ntTSL 5 BASIC16.31■□□□□ 0.2
Col11a1Q61245 Gnb2-215ENSMUST00000170293 993 ntTSL 5 BASIC16.31■□□□□ 0.2
Col11a1Q61245 Gm21470-201ENSMUST00000187680 696 ntBASIC16.31■□□□□ 0.2
Col11a1Q61245 Gm29152-201ENSMUST00000189284 325 ntTSL 5 BASIC16.31■□□□□ 0.2
Col11a1Q61245 Svip-203ENSMUST00000209193 487 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Col11a1Q61245 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col11a1Q61245 Miip-201ENSMUST00000030886 1813 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col11a1Q61245 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col11a1Q61245 Sh2b3-204ENSMUST00000122426 2777 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col11a1Q61245 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col11a1Q61245 Fuca1-201ENSMUST00000030434 2525 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col11a1Q61245 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col11a1Q61245 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col11a1Q61245 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col11a1Q61245 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Col11a1Q61245 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col11a1Q61245 Lsm2-202ENSMUST00000114011 840 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col11a1Q61245 Gm44974-201ENSMUST00000206387 1279 ntBASIC16.31■□□□□ 0.2
Col11a1Q61245 AC153845.2-201ENSMUST00000217535 673 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Col11a1Q61245 Gm34084-201ENSMUST00000222236 1298 ntTSL 5 BASIC16.31■□□□□ 0.2
Col11a1Q61245 CT485787.1-201ENSMUST00000225617 968 ntBASIC16.31■□□□□ 0.2
Col11a1Q61245 CT009713.10-202ENSMUST00000225734 696 ntBASIC16.31■□□□□ 0.2
Col11a1Q61245 Tmem86b-201ENSMUST00000055085 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 34.8 ms