Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
COL5A3P25940 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
COL5A3P25940 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
COL5A3P25940 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC22.21■■□□□ 1.15
COL5A3P25940 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
COL5A3P25940 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC22.21■■□□□ 1.15
COL5A3P25940 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC22.21■■□□□ 1.15
COL5A3P25940 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
COL5A3P25940 REM2-202ENST00000536884 1331 ntTSL 2 BASIC22.21■■□□□ 1.15
COL5A3P25940 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
COL5A3P25940 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
COL5A3P25940 FALEC-201ENST00000416894 566 ntTSL 3 BASIC22.21■■□□□ 1.15
COL5A3P25940 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
COL5A3P25940 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
COL5A3P25940 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC22.21■■□□□ 1.15
COL5A3P25940 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC22.21■■□□□ 1.15
COL5A3P25940 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC22.21■■□□□ 1.15
COL5A3P25940 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC22.21■■□□□ 1.15
COL5A3P25940 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC22.21■■□□□ 1.15
COL5A3P25940 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC22.21■■□□□ 1.15
COL5A3P25940 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
COL5A3P25940 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC22.21■■□□□ 1.15
COL5A3P25940 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
COL5A3P25940 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
COL5A3P25940 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
COL5A3P25940 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
COL5A3P25940 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC22.21■■□□□ 1.15
COL5A3P25940 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC22.21■■□□□ 1.15
COL5A3P25940 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC22.2■■□□□ 1.14
COL5A3P25940 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
COL5A3P25940 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC22.2■■□□□ 1.14
COL5A3P25940 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC22.2■■□□□ 1.14
COL5A3P25940 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC22.2■■□□□ 1.14
COL5A3P25940 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC22.2■■□□□ 1.14
COL5A3P25940 IGHV3-52-201ENST00000519770 353 ntBASIC22.2■■□□□ 1.14
COL5A3P25940 GREM1-201ENST00000560677 623 ntTSL 4 BASIC22.2■■□□□ 1.14
COL5A3P25940 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC22.2■■□□□ 1.14
COL5A3P25940 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC22.2■■□□□ 1.14
COL5A3P25940 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC22.2■■□□□ 1.14
COL5A3P25940 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC22.2■■□□□ 1.14
COL5A3P25940 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
COL5A3P25940 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC22.2■■□□□ 1.14
COL5A3P25940 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
COL5A3P25940 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
COL5A3P25940 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC22.2■■□□□ 1.14
COL5A3P25940 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
COL5A3P25940 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC22.2■■□□□ 1.14
COL5A3P25940 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC22.2■■□□□ 1.14
COL5A3P25940 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
COL5A3P25940 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
COL5A3P25940 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC22.2■■□□□ 1.14
COL5A3P25940 PAWRP1-201ENST00000451083 565 ntBASIC22.2■■□□□ 1.14
COL5A3P25940 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC22.2■■□□□ 1.14
COL5A3P25940 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC22.2■■□□□ 1.14
COL5A3P25940 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC22.2■■□□□ 1.14
COL5A3P25940 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC22.2■■□□□ 1.14
COL5A3P25940 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC22.2■■□□□ 1.14
COL5A3P25940 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
COL5A3P25940 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC22.19■■□□□ 1.14
COL5A3P25940 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
COL5A3P25940 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC22.19■■□□□ 1.14
COL5A3P25940 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC22.19■■□□□ 1.14
COL5A3P25940 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
COL5A3P25940 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
COL5A3P25940 CCDC74BP1-201ENST00000508880 1123 ntBASIC22.19■■□□□ 1.14
COL5A3P25940 AC092364.2-202ENST00000597012 1073 ntBASIC22.19■■□□□ 1.14
COL5A3P25940 AJ011932.1-201ENST00000621707 465 ntBASIC22.19■■□□□ 1.14
COL5A3P25940 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
COL5A3P25940 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
COL5A3P25940 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
COL5A3P25940 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC22.19■■□□□ 1.14
COL5A3P25940 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC22.18■■□□□ 1.14
COL5A3P25940 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC22.18■■□□□ 1.14
COL5A3P25940 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC22.18■■□□□ 1.14
COL5A3P25940 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC22.18■■□□□ 1.14
COL5A3P25940 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
COL5A3P25940 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
COL5A3P25940 AL513480.1-201ENST00000451731 511 ntBASIC22.18■■□□□ 1.14
COL5A3P25940 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC22.18■■□□□ 1.14
COL5A3P25940 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC22.18■■□□□ 1.14
COL5A3P25940 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC22.18■■□□□ 1.14
COL5A3P25940 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC22.18■■□□□ 1.14
COL5A3P25940 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
COL5A3P25940 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
COL5A3P25940 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC22.18■■□□□ 1.14
COL5A3P25940 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC22.18■■□□□ 1.14
COL5A3P25940 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
COL5A3P25940 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
COL5A3P25940 EFTUD1P1-204ENST00000560401 1798 ntBASIC22.18■■□□□ 1.14
COL5A3P25940 BSG-215ENST00000618006 1329 ntTSL 2 BASIC22.18■■□□□ 1.14
COL5A3P25940 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
COL5A3P25940 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
COL5A3P25940 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC22.17■■□□□ 1.14
COL5A3P25940 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC22.17■■□□□ 1.14
COL5A3P25940 NEK7-201ENST00000367383 586 ntTSL 2 BASIC22.17■■□□□ 1.14
COL5A3P25940 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC22.17■■□□□ 1.14
COL5A3P25940 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC22.17■■□□□ 1.14
COL5A3P25940 SLC25A6P2-201ENST00000497974 877 ntBASIC22.17■■□□□ 1.14
COL5A3P25940 AC107918.2-201ENST00000530817 355 ntBASIC22.17■■□□□ 1.14
COL5A3P25940 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms