Protein–RNA interactions for Protein: Q9ESN2

Trim39, E3 ubiquitin-protein ligase TRIM39, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39Q9ESN2 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
Trim39Q9ESN2 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Trim39Q9ESN2 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Trim39Q9ESN2 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
Trim39Q9ESN2 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
Trim39Q9ESN2 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Trim39Q9ESN2 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
Trim39Q9ESN2 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC20.57■□□□□ 0.88
Trim39Q9ESN2 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trim39Q9ESN2 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trim39Q9ESN2 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Trim39Q9ESN2 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Trim39Q9ESN2 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trim39Q9ESN2 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trim39Q9ESN2 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trim39Q9ESN2 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
Trim39Q9ESN2 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim39Q9ESN2 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim39Q9ESN2 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim39Q9ESN2 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC20.55■□□□□ 0.88
Trim39Q9ESN2 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim39Q9ESN2 Gm4419-202ENSMUST00000226239 1431 ntBASIC20.54■□□□□ 0.88
Trim39Q9ESN2 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trim39Q9ESN2 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trim39Q9ESN2 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trim39Q9ESN2 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trim39Q9ESN2 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trim39Q9ESN2 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trim39Q9ESN2 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC20.53■□□□□ 0.88
Trim39Q9ESN2 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
Trim39Q9ESN2 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC20.53■□□□□ 0.88
Trim39Q9ESN2 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim39Q9ESN2 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim39Q9ESN2 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim39Q9ESN2 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Trim39Q9ESN2 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC20.52■□□□□ 0.88
Trim39Q9ESN2 Gm4799-201ENSMUST00000095396 657 ntBASIC20.52■□□□□ 0.88
Trim39Q9ESN2 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim39Q9ESN2 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim39Q9ESN2 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim39Q9ESN2 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
Trim39Q9ESN2 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Trim39Q9ESN2 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim39Q9ESN2 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim39Q9ESN2 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim39Q9ESN2 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim39Q9ESN2 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Trim39Q9ESN2 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC20.51■□□□□ 0.87
Trim39Q9ESN2 H3f3aos-201ENSMUST00000097448 2905 ntBASIC20.51■□□□□ 0.87
Trim39Q9ESN2 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim39Q9ESN2 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Trim39Q9ESN2 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim39Q9ESN2 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Trim39Q9ESN2 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trim39Q9ESN2 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trim39Q9ESN2 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trim39Q9ESN2 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trim39Q9ESN2 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trim39Q9ESN2 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Trim39Q9ESN2 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
Trim39Q9ESN2 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trim39Q9ESN2 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trim39Q9ESN2 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
Trim39Q9ESN2 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC20.48■□□□□ 0.87
Trim39Q9ESN2 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trim39Q9ESN2 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trim39Q9ESN2 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC20.48■□□□□ 0.87
Trim39Q9ESN2 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trim39Q9ESN2 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC20.47■□□□□ 0.87
Trim39Q9ESN2 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Trim39Q9ESN2 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
Trim39Q9ESN2 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC20.47■□□□□ 0.87
Trim39Q9ESN2 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trim39Q9ESN2 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
Trim39Q9ESN2 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC20.47■□□□□ 0.87
Trim39Q9ESN2 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC20.46■□□□□ 0.87
Trim39Q9ESN2 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim39Q9ESN2 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim39Q9ESN2 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim39Q9ESN2 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim39Q9ESN2 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC20.46■□□□□ 0.87
Trim39Q9ESN2 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim39Q9ESN2 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim39Q9ESN2 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim39Q9ESN2 Gm13889-201ENSMUST00000099689 1386 ntBASIC20.46■□□□□ 0.87
Trim39Q9ESN2 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trim39Q9ESN2 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Trim39Q9ESN2 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trim39Q9ESN2 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Trim39Q9ESN2 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC20.45■□□□□ 0.86
Trim39Q9ESN2 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
Trim39Q9ESN2 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trim39Q9ESN2 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
Trim39Q9ESN2 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC20.44■□□□□ 0.86
Trim39Q9ESN2 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
Trim39Q9ESN2 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Trim39Q9ESN2 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trim39Q9ESN2 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC20.43■□□□□ 0.86
Trim39Q9ESN2 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC20.43■□□□□ 0.86
Trim39Q9ESN2 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 18.7 ms