Protein–RNA interactions for Protein: Q99LC2

Cstf1, Cleavage stimulation factor subunit 1, mousemouse

Known RBP Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cstf1Q99LC2 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC22.4■■□□□ 1.18
Cstf1Q99LC2 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Cstf1Q99LC2 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Cstf1Q99LC2 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC22.4■■□□□ 1.18
Cstf1Q99LC2 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
Cstf1Q99LC2 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Cstf1Q99LC2 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.18
Cstf1Q99LC2 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
Cstf1Q99LC2 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC22.39■■□□□ 1.18
Cstf1Q99LC2 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC22.39■■□□□ 1.18
Cstf1Q99LC2 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC22.39■■□□□ 1.17
Cstf1Q99LC2 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
Cstf1Q99LC2 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
Cstf1Q99LC2 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Cstf1Q99LC2 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Cstf1Q99LC2 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Cstf1Q99LC2 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
Cstf1Q99LC2 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
Cstf1Q99LC2 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC22.37■■□□□ 1.17
Cstf1Q99LC2 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC22.37■■□□□ 1.17
Cstf1Q99LC2 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Cstf1Q99LC2 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Cstf1Q99LC2 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC22.36■■□□□ 1.17
Cstf1Q99LC2 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Cstf1Q99LC2 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Cstf1Q99LC2 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Cstf1Q99LC2 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC22.35■■□□□ 1.17
Cstf1Q99LC2 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Cstf1Q99LC2 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Cstf1Q99LC2 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Cstf1Q99LC2 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Cstf1Q99LC2 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC22.34■■□□□ 1.17
Cstf1Q99LC2 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC22.34■■□□□ 1.17
Cstf1Q99LC2 Gm10232-201ENSMUST00000089221 720 ntBASIC22.34■■□□□ 1.17
Cstf1Q99LC2 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Cstf1Q99LC2 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC22.34■■□□□ 1.17
Cstf1Q99LC2 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC22.34■■□□□ 1.17
Cstf1Q99LC2 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Cstf1Q99LC2 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC22.33■■□□□ 1.17
Cstf1Q99LC2 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC22.33■■□□□ 1.16
Cstf1Q99LC2 Nt5m-201ENSMUST00000102695 1306 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Cstf1Q99LC2 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
Cstf1Q99LC2 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Cstf1Q99LC2 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Cstf1Q99LC2 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC22.32■■□□□ 1.16
Cstf1Q99LC2 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC22.31■■□□□ 1.16
Cstf1Q99LC2 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Cstf1Q99LC2 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
Cstf1Q99LC2 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC22.31■■□□□ 1.16
Cstf1Q99LC2 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
Cstf1Q99LC2 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Cstf1Q99LC2 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
Cstf1Q99LC2 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
Cstf1Q99LC2 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC22.3■■□□□ 1.16
Cstf1Q99LC2 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Cstf1Q99LC2 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Cstf1Q99LC2 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC22.3■■□□□ 1.16
Cstf1Q99LC2 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Cstf1Q99LC2 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Cstf1Q99LC2 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
Cstf1Q99LC2 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC22.28■■□□□ 1.16
Cstf1Q99LC2 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
Cstf1Q99LC2 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Cstf1Q99LC2 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Cstf1Q99LC2 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
Cstf1Q99LC2 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC22.28■■□□□ 1.16
Cstf1Q99LC2 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
Cstf1Q99LC2 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC22.28■■□□□ 1.16
Cstf1Q99LC2 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC22.27■■□□□ 1.16
Cstf1Q99LC2 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC22.27■■□□□ 1.16
Cstf1Q99LC2 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC22.27■■□□□ 1.15
Cstf1Q99LC2 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC22.26■■□□□ 1.15
Cstf1Q99LC2 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Cstf1Q99LC2 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Cstf1Q99LC2 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC22.26■■□□□ 1.15
Cstf1Q99LC2 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Cstf1Q99LC2 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
Cstf1Q99LC2 Serp2-204ENSMUST00000228055 705 ntBASIC22.25■■□□□ 1.15
Cstf1Q99LC2 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
Cstf1Q99LC2 Fezf2-202ENSMUST00000224023 1917 ntBASIC22.24■■□□□ 1.15
Cstf1Q99LC2 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC22.24■■□□□ 1.15
Cstf1Q99LC2 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Cstf1Q99LC2 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
Cstf1Q99LC2 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC22.24■■□□□ 1.15
Cstf1Q99LC2 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Cstf1Q99LC2 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Cstf1Q99LC2 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Cstf1Q99LC2 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC22.23■■□□□ 1.15
Cstf1Q99LC2 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
Cstf1Q99LC2 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC22.23■■□□□ 1.15
Cstf1Q99LC2 Gm4419-202ENSMUST00000226239 1431 ntBASIC22.23■■□□□ 1.15
Cstf1Q99LC2 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
Cstf1Q99LC2 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Cstf1Q99LC2 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
Cstf1Q99LC2 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Cstf1Q99LC2 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC22.21■■□□□ 1.15
Cstf1Q99LC2 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
Cstf1Q99LC2 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Cstf1Q99LC2 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC22.2■■□□□ 1.14
Cstf1Q99LC2 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
Retrieved 100 of 76,532 protein–RNA pairs in 92 ms