Protein–RNA interactions for Protein: Q91XZ7

Pcdhb3, Protocadherin beta 3, mousemouse

Predictions only

Length 784 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhb3Q91XZ7 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Pcdhb3Q91XZ7 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC22.17■■□□□ 1.14
Pcdhb3Q91XZ7 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC22.16■■□□□ 1.14
Pcdhb3Q91XZ7 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
Pcdhb3Q91XZ7 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC22.16■■□□□ 1.14
Pcdhb3Q91XZ7 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Pcdhb3Q91XZ7 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
Pcdhb3Q91XZ7 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Pcdhb3Q91XZ7 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC22.14■■□□□ 1.14
Pcdhb3Q91XZ7 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC22.14■■□□□ 1.14
Pcdhb3Q91XZ7 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
Pcdhb3Q91XZ7 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.13
Pcdhb3Q91XZ7 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
Pcdhb3Q91XZ7 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC22.14■■□□□ 1.13
Pcdhb3Q91XZ7 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
Pcdhb3Q91XZ7 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Pcdhb3Q91XZ7 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
Pcdhb3Q91XZ7 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC22.13■■□□□ 1.13
Pcdhb3Q91XZ7 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
Pcdhb3Q91XZ7 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
Pcdhb3Q91XZ7 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC22.12■■□□□ 1.13
Pcdhb3Q91XZ7 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
Pcdhb3Q91XZ7 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Pcdhb3Q91XZ7 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
Pcdhb3Q91XZ7 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC22.11■■□□□ 1.13
Pcdhb3Q91XZ7 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Pcdhb3Q91XZ7 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Pcdhb3Q91XZ7 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC22.1■■□□□ 1.13
Pcdhb3Q91XZ7 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Pcdhb3Q91XZ7 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC22.1■■□□□ 1.13
Pcdhb3Q91XZ7 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC22.09■■□□□ 1.13
Pcdhb3Q91XZ7 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Pcdhb3Q91XZ7 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Pcdhb3Q91XZ7 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
Pcdhb3Q91XZ7 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Pcdhb3Q91XZ7 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Pcdhb3Q91XZ7 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Pcdhb3Q91XZ7 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
Pcdhb3Q91XZ7 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
Pcdhb3Q91XZ7 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC22.07■■□□□ 1.12
Pcdhb3Q91XZ7 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC22.07■■□□□ 1.12
Pcdhb3Q91XZ7 Gm32051-202ENSMUST00000197905 2385 ntBASIC22.07■■□□□ 1.12
Pcdhb3Q91XZ7 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Pcdhb3Q91XZ7 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC22.07■■□□□ 1.12
Pcdhb3Q91XZ7 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Pcdhb3Q91XZ7 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Pcdhb3Q91XZ7 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
Pcdhb3Q91XZ7 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC22.06■■□□□ 1.12
Pcdhb3Q91XZ7 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC22.05■■□□□ 1.12
Pcdhb3Q91XZ7 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Pcdhb3Q91XZ7 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC22.05■■□□□ 1.12
Pcdhb3Q91XZ7 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC22.05■■□□□ 1.12
Pcdhb3Q91XZ7 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC22.05■■□□□ 1.12
Pcdhb3Q91XZ7 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC22.04■■□□□ 1.12
Pcdhb3Q91XZ7 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC22.04■■□□□ 1.12
Pcdhb3Q91XZ7 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Pcdhb3Q91XZ7 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Pcdhb3Q91XZ7 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
Pcdhb3Q91XZ7 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
Pcdhb3Q91XZ7 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
Pcdhb3Q91XZ7 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Pcdhb3Q91XZ7 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Pcdhb3Q91XZ7 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
Pcdhb3Q91XZ7 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC22.03■■□□□ 1.12
Pcdhb3Q91XZ7 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC22.03■■□□□ 1.12
Pcdhb3Q91XZ7 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC22.03■■□□□ 1.12
Pcdhb3Q91XZ7 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Pcdhb3Q91XZ7 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC22.03■■□□□ 1.12
Pcdhb3Q91XZ7 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC22.03■■□□□ 1.12
Pcdhb3Q91XZ7 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC22.02■■□□□ 1.12
Pcdhb3Q91XZ7 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC22.02■■□□□ 1.12
Pcdhb3Q91XZ7 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
Pcdhb3Q91XZ7 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
Pcdhb3Q91XZ7 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
Pcdhb3Q91XZ7 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
Pcdhb3Q91XZ7 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Pcdhb3Q91XZ7 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC22.01■■□□□ 1.11
Pcdhb3Q91XZ7 Gm7432-201ENSMUST00000210343 879 ntBASIC22.01■■□□□ 1.11
Pcdhb3Q91XZ7 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Pcdhb3Q91XZ7 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Pcdhb3Q91XZ7 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC22.01■■□□□ 1.11
Pcdhb3Q91XZ7 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC22■■□□□ 1.11
Pcdhb3Q91XZ7 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC22■■□□□ 1.11
Pcdhb3Q91XZ7 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC22■■□□□ 1.11
Pcdhb3Q91XZ7 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Pcdhb3Q91XZ7 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Pcdhb3Q91XZ7 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Pcdhb3Q91XZ7 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Pcdhb3Q91XZ7 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC21.99■■□□□ 1.11
Pcdhb3Q91XZ7 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
Pcdhb3Q91XZ7 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
Pcdhb3Q91XZ7 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
Pcdhb3Q91XZ7 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC21.99■■□□□ 1.11
Pcdhb3Q91XZ7 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
Pcdhb3Q91XZ7 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
Pcdhb3Q91XZ7 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
Pcdhb3Q91XZ7 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Pcdhb3Q91XZ7 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Pcdhb3Q91XZ7 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
Pcdhb3Q91XZ7 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Retrieved 100 of 76,532 protein–RNA pairs in 99.6 ms