Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Cdx1P18111 Gm7432-201ENSMUST00000210343 879 ntBASIC17.8■□□□□ 0.44
Cdx1P18111 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Cdx1P18111 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Cdx1P18111 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Cdx1P18111 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Cdx1P18111 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Cdx1P18111 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC17.79■□□□□ 0.44
Cdx1P18111 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Cdx1P18111 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Cdx1P18111 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Cdx1P18111 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Cdx1P18111 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Cdx1P18111 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Cdx1P18111 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Cdx1P18111 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Cdx1P18111 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Cdx1P18111 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
Cdx1P18111 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Cdx1P18111 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
Cdx1P18111 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Cdx1P18111 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
Cdx1P18111 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Cdx1P18111 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Cdx1P18111 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Cdx1P18111 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Cdx1P18111 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Cdx1P18111 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC17.76■□□□□ 0.43
Cdx1P18111 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Cdx1P18111 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Cdx1P18111 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC17.76■□□□□ 0.43
Cdx1P18111 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC17.75■□□□□ 0.43
Cdx1P18111 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Cdx1P18111 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Cdx1P18111 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Cdx1P18111 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Cdx1P18111 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Cdx1P18111 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC17.75■□□□□ 0.43
Cdx1P18111 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Cdx1P18111 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Cdx1P18111 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Cdx1P18111 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC17.74■□□□□ 0.43
Cdx1P18111 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC17.74■□□□□ 0.43
Cdx1P18111 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
Cdx1P18111 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Cdx1P18111 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Cdx1P18111 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC17.73■□□□□ 0.43
Cdx1P18111 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Cdx1P18111 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Cdx1P18111 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Cdx1P18111 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Cdx1P18111 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Cdx1P18111 AC124392.1-201ENSMUST00000225172 5324 ntBASIC17.72■□□□□ 0.43
Cdx1P18111 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC17.72■□□□□ 0.43
Cdx1P18111 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC17.72■□□□□ 0.43
Cdx1P18111 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Cdx1P18111 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
Cdx1P18111 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
Cdx1P18111 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Cdx1P18111 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Cdx1P18111 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Cdx1P18111 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC17.71■□□□□ 0.43
Cdx1P18111 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Cdx1P18111 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Cdx1P18111 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
Cdx1P18111 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Cdx1P18111 Gm6934-201ENSMUST00000194780 1905 ntBASIC17.7■□□□□ 0.42
Cdx1P18111 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Cdx1P18111 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC17.7■□□□□ 0.42
Cdx1P18111 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Cdx1P18111 Gm43006-201ENSMUST00000197702 1602 ntBASIC17.69■□□□□ 0.42
Cdx1P18111 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Cdx1P18111 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Cdx1P18111 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cdx1P18111 Triobp-201ENSMUST00000109687 2570 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cdx1P18111 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cdx1P18111 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cdx1P18111 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cdx1P18111 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cdx1P18111 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Cdx1P18111 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Cdx1P18111 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Cdx1P18111 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cdx1P18111 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC17.67■□□□□ 0.42
Cdx1P18111 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Cdx1P18111 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cdx1P18111 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Cdx1P18111 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
Cdx1P18111 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Cdx1P18111 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Cdx1P18111 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC17.66■□□□□ 0.42
Cdx1P18111 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cdx1P18111 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cdx1P18111 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cdx1P18111 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cdx1P18111 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC17.65■□□□□ 0.42
Cdx1P18111 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Cdx1P18111 Gm11599-201ENSMUST00000118720 878 ntBASIC17.64■□□□□ 0.41
Cdx1P18111 Gm10616-201ENSMUST00000205285 2127 ntBASIC17.64■□□□□ 0.41
Cdx1P18111 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC17.64■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 22.5 ms