Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Pcdh1F7BJK1 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Pcdh1F7BJK1 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC20.07■□□□□ 0.8
Pcdh1F7BJK1 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Pcdh1F7BJK1 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC20.07■□□□□ 0.8
Pcdh1F7BJK1 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Pcdh1F7BJK1 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Pcdh1F7BJK1 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Pcdh1F7BJK1 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
Pcdh1F7BJK1 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Pcdh1F7BJK1 Dmtn-209ENSMUST00000228295 2572 ntBASIC20.06■□□□□ 0.8
Pcdh1F7BJK1 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Pcdh1F7BJK1 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
Pcdh1F7BJK1 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Pcdh1F7BJK1 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Pcdh1F7BJK1 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
Pcdh1F7BJK1 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
Pcdh1F7BJK1 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Pcdh1F7BJK1 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Pcdh1F7BJK1 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Pcdh1F7BJK1 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
Pcdh1F7BJK1 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Pcdh1F7BJK1 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC20.04■□□□□ 0.8
Pcdh1F7BJK1 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Pcdh1F7BJK1 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
Pcdh1F7BJK1 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC20.03■□□□□ 0.8
Pcdh1F7BJK1 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC20.03■□□□□ 0.8
Pcdh1F7BJK1 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC20.03■□□□□ 0.8
Pcdh1F7BJK1 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Pcdh1F7BJK1 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC20.03■□□□□ 0.8
Pcdh1F7BJK1 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Pcdh1F7BJK1 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Pcdh1F7BJK1 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Pcdh1F7BJK1 Gm26766-202ENSMUST00000227544 2347 ntBASIC20.02■□□□□ 0.8
Pcdh1F7BJK1 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC20.02■□□□□ 0.8
Pcdh1F7BJK1 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Pcdh1F7BJK1 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
Pcdh1F7BJK1 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Pcdh1F7BJK1 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Pcdh1F7BJK1 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
Pcdh1F7BJK1 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Pcdh1F7BJK1 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Pcdh1F7BJK1 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Pcdh1F7BJK1 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Pcdh1F7BJK1 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Pcdh1F7BJK1 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Pcdh1F7BJK1 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Pcdh1F7BJK1 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC20■□□□□ 0.79
Pcdh1F7BJK1 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
Pcdh1F7BJK1 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
Pcdh1F7BJK1 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC19.99■□□□□ 0.79
Pcdh1F7BJK1 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Pcdh1F7BJK1 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Pcdh1F7BJK1 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Pcdh1F7BJK1 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Pcdh1F7BJK1 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC19.98■□□□□ 0.79
Pcdh1F7BJK1 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC19.98■□□□□ 0.79
Pcdh1F7BJK1 Gm9939-201ENSMUST00000067161 1154 ntBASIC19.98■□□□□ 0.79
Pcdh1F7BJK1 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Pcdh1F7BJK1 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
Pcdh1F7BJK1 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Pcdh1F7BJK1 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC19.97■□□□□ 0.79
Pcdh1F7BJK1 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Pcdh1F7BJK1 Plpp5-201ENSMUST00000068916 1483 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Pcdh1F7BJK1 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Pcdh1F7BJK1 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Pcdh1F7BJK1 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Pcdh1F7BJK1 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Pcdh1F7BJK1 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Pcdh1F7BJK1 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Pcdh1F7BJK1 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Pcdh1F7BJK1 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
Pcdh1F7BJK1 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
Pcdh1F7BJK1 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Pcdh1F7BJK1 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Pcdh1F7BJK1 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC19.94■□□□□ 0.78
Pcdh1F7BJK1 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC19.94■□□□□ 0.78
Pcdh1F7BJK1 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC19.94■□□□□ 0.78
Pcdh1F7BJK1 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Pcdh1F7BJK1 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC19.94■□□□□ 0.78
Pcdh1F7BJK1 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Pcdh1F7BJK1 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Pcdh1F7BJK1 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Pcdh1F7BJK1 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Pcdh1F7BJK1 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
Pcdh1F7BJK1 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
Pcdh1F7BJK1 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Pcdh1F7BJK1 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Pcdh1F7BJK1 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Pcdh1F7BJK1 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Pcdh1F7BJK1 Gm6821-201ENSMUST00000107540 542 ntBASIC19.92■□□□□ 0.78
Pcdh1F7BJK1 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC19.91■□□□□ 0.78
Pcdh1F7BJK1 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Pcdh1F7BJK1 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Pcdh1F7BJK1 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Pcdh1F7BJK1 AC164433.2-201ENSMUST00000226346 1701 ntBASIC19.9■□□□□ 0.78
Pcdh1F7BJK1 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
Pcdh1F7BJK1 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Pcdh1F7BJK1 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Pcdh1F7BJK1 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 90.1 ms