Protein–RNA interactions for Protein: A3KFM7

Chd6, Chromodomain-helicase-DNA-binding protein 6, mousemouse

Predictions only

Length 2,711 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd6A3KFM7 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Chd6A3KFM7 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC18.85■□□□□ 0.61
Chd6A3KFM7 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Chd6A3KFM7 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Chd6A3KFM7 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Chd6A3KFM7 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Chd6A3KFM7 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Chd6A3KFM7 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC18.83■□□□□ 0.6
Chd6A3KFM7 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Chd6A3KFM7 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Chd6A3KFM7 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC18.82■□□□□ 0.6
Chd6A3KFM7 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
Chd6A3KFM7 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC18.81■□□□□ 0.6
Chd6A3KFM7 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Chd6A3KFM7 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Chd6A3KFM7 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC18.81■□□□□ 0.6
Chd6A3KFM7 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Chd6A3KFM7 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Chd6A3KFM7 Gm45417-201ENSMUST00000209533 758 ntBASIC18.8■□□□□ 0.6
Chd6A3KFM7 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Chd6A3KFM7 Gm22238-201ENSMUST00000175222 88 ntBASIC18.8■□□□□ 0.6
Chd6A3KFM7 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Chd6A3KFM7 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Chd6A3KFM7 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Chd6A3KFM7 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Chd6A3KFM7 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Chd6A3KFM7 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Chd6A3KFM7 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Chd6A3KFM7 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC18.79■□□□□ 0.6
Chd6A3KFM7 Terc-201ENSMUST00000082862 423 ntBASIC18.79■□□□□ 0.6
Chd6A3KFM7 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Chd6A3KFM7 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Chd6A3KFM7 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC18.78■□□□□ 0.6
Chd6A3KFM7 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Chd6A3KFM7 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
Chd6A3KFM7 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Chd6A3KFM7 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Chd6A3KFM7 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Chd6A3KFM7 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Chd6A3KFM7 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Chd6A3KFM7 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
Chd6A3KFM7 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC18.77■□□□□ 0.59
Chd6A3KFM7 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Chd6A3KFM7 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC18.76■□□□□ 0.59
Chd6A3KFM7 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Chd6A3KFM7 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Chd6A3KFM7 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Chd6A3KFM7 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Chd6A3KFM7 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Chd6A3KFM7 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Chd6A3KFM7 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
Chd6A3KFM7 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Chd6A3KFM7 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Chd6A3KFM7 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Chd6A3KFM7 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Chd6A3KFM7 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Chd6A3KFM7 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Chd6A3KFM7 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC18.75■□□□□ 0.59
Chd6A3KFM7 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Chd6A3KFM7 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC18.75■□□□□ 0.59
Chd6A3KFM7 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC18.75■□□□□ 0.59
Chd6A3KFM7 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC18.74■□□□□ 0.59
Chd6A3KFM7 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Chd6A3KFM7 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Chd6A3KFM7 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
Chd6A3KFM7 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC18.73■□□□□ 0.59
Chd6A3KFM7 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Chd6A3KFM7 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Chd6A3KFM7 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
Chd6A3KFM7 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Chd6A3KFM7 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Chd6A3KFM7 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC18.73■□□□□ 0.59
Chd6A3KFM7 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
Chd6A3KFM7 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Chd6A3KFM7 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Chd6A3KFM7 Gm44428-201ENSMUST00000204474 874 ntBASIC18.73■□□□□ 0.59
Chd6A3KFM7 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Chd6A3KFM7 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC18.72■□□□□ 0.59
Chd6A3KFM7 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Chd6A3KFM7 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
Chd6A3KFM7 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
Chd6A3KFM7 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
Chd6A3KFM7 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Chd6A3KFM7 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Chd6A3KFM7 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Chd6A3KFM7 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC18.71■□□□□ 0.59
Chd6A3KFM7 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Chd6A3KFM7 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
Chd6A3KFM7 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
Chd6A3KFM7 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Chd6A3KFM7 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC18.7■□□□□ 0.58
Chd6A3KFM7 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Chd6A3KFM7 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Chd6A3KFM7 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Chd6A3KFM7 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Chd6A3KFM7 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC18.7■□□□□ 0.58
Chd6A3KFM7 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Chd6A3KFM7 Golgb1-201ENSMUST00000023534 498 ntBASIC18.69■□□□□ 0.58
Chd6A3KFM7 Gm2011-201ENSMUST00000203124 1263 ntBASIC18.69■□□□□ 0.58
Chd6A3KFM7 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 13.8 ms