Protein–RNA interactions for Protein: Q9EQM3

Nkx2-4, Homeobox protein Nkx-2.4, mousemouse

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-4Q9EQM3 Fnbp1-208ENSMUST00000113560 4726 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Nkx2-4Q9EQM3 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Nkx2-4Q9EQM3 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Nkx2-4Q9EQM3 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
Nkx2-4Q9EQM3 Tmem184b-201ENSMUST00000074991 3361 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Nkx2-4Q9EQM3 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Nkx2-4Q9EQM3 Scube3-201ENSMUST00000043503 6699 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Nkx2-4Q9EQM3 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Nkx2-4Q9EQM3 Gm5303-201ENSMUST00000117943 1252 ntBASIC15.18■□□□□ 0.02
Nkx2-4Q9EQM3 Pax5-206ENSMUST00000134968 969 ntTSL 5 BASIC15.18■□□□□ 0.02
Nkx2-4Q9EQM3 Myl3-203ENSMUST00000136695 614 ntAPPRIS ALT2 TSL 3 BASIC15.18■□□□□ 0.02
Nkx2-4Q9EQM3 Surf2-201ENSMUST00000015017 1203 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Nkx2-4Q9EQM3 Rps19-ps13-201ENSMUST00000180504 441 ntBASIC15.18■□□□□ 0.02
Nkx2-4Q9EQM3 Ube2a-205ENSMUST00000201068 1298 ntTSL 5 BASIC15.18■□□□□ 0.02
Nkx2-4Q9EQM3 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Nkx2-4Q9EQM3 Vkorc1-201ENSMUST00000033074 748 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Nkx2-4Q9EQM3 Rcn3-201ENSMUST00000019683 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Nkx2-4Q9EQM3 Zbtb11-201ENSMUST00000050248 4920 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
Nkx2-4Q9EQM3 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Nkx2-4Q9EQM3 Plk1-201ENSMUST00000033154 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Nkx2-4Q9EQM3 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Nkx2-4Q9EQM3 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC15.18■□□□□ 0.02
Nkx2-4Q9EQM3 AC114008.2-201ENSMUST00000227699 1347 ntBASIC15.17■□□□□ 0.02
Nkx2-4Q9EQM3 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Nkx2-4Q9EQM3 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Nkx2-4Q9EQM3 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Nkx2-4Q9EQM3 Tigd5-201ENSMUST00000192937 4801 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
Nkx2-4Q9EQM3 Ripor2-205ENSMUST00000110384 5608 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Nkx2-4Q9EQM3 Sorcs3-201ENSMUST00000078880 5634 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Nkx2-4Q9EQM3 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
Nkx2-4Q9EQM3 4921504A21Rik-201ENSMUST00000180594 2156 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Nkx2-4Q9EQM3 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Nkx2-4Q9EQM3 Wfikkn1-201ENSMUST00000095487 1981 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Nkx2-4Q9EQM3 Taco1-201ENSMUST00000002048 1383 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Nkx2-4Q9EQM3 1700049J03Rik-201ENSMUST00000011196 421 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Nkx2-4Q9EQM3 Gm15420-201ENSMUST00000133274 382 ntTSL 3 BASIC15.17■□□□□ 0.02
Nkx2-4Q9EQM3 Klk11-202ENSMUST00000171458 1260 ntAPPRIS P3 TSL 2 BASIC15.17■□□□□ 0.02
Nkx2-4Q9EQM3 Stk19-ps1-201ENSMUST00000174597 517 ntBASIC15.17■□□□□ 0.02
Nkx2-4Q9EQM3 Gm29585-201ENSMUST00000185270 514 ntTSL 5 BASIC15.17■□□□□ 0.02
Nkx2-4Q9EQM3 AC154846.1-201ENSMUST00000226278 862 ntBASIC15.17■□□□□ 0.02
Nkx2-4Q9EQM3 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Nkx2-4Q9EQM3 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Nkx2-4Q9EQM3 Aph1a-202ENSMUST00000056710 1601 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Nkx2-4Q9EQM3 Asb10-203ENSMUST00000119657 1536 ntTSL 5 BASIC15.17■□□□□ 0.02
Nkx2-4Q9EQM3 Olah-201ENSMUST00000027955 1533 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Nkx2-4Q9EQM3 Ptprs-211ENSMUST00000223859 5588 ntBASIC15.17■□□□□ 0.02
Nkx2-4Q9EQM3 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Nkx2-4Q9EQM3 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Nkx2-4Q9EQM3 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Nkx2-4Q9EQM3 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Nkx2-4Q9EQM3 Ldb3-208ENSMUST00000228044 1883 ntAPPRIS ALT2 BASIC15.16■□□□□ 0.02
Nkx2-4Q9EQM3 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Nkx2-4Q9EQM3 Nfe2-207ENSMUST00000134554 1761 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
Nkx2-4Q9EQM3 Tcf21-202ENSMUST00000218002 1788 ntBASIC15.16■□□□□ 0.02
Nkx2-4Q9EQM3 Kif21a-203ENSMUST00000100304 6439 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
Nkx2-4Q9EQM3 Kif21a-202ENSMUST00000088614 6439 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
Nkx2-4Q9EQM3 Gm17396-201ENSMUST00000172075 1655 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Nkx2-4Q9EQM3 Dhrs1-201ENSMUST00000002403 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Nkx2-4Q9EQM3 Dmkn-204ENSMUST00000085691 2007 ntAPPRIS P4 TSL 1 (best) BASIC15.16■□□□□ 0.02
Nkx2-4Q9EQM3 Il18r1-203ENSMUST00000167723 1919 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Nkx2-4Q9EQM3 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Nkx2-4Q9EQM3 Serpinf1-201ENSMUST00000000769 1832 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Nkx2-4Q9EQM3 Gm7820-201ENSMUST00000121012 1052 ntBASIC15.16■□□□□ 0.02
Nkx2-4Q9EQM3 Gm11535-201ENSMUST00000145517 778 ntTSL 3 BASIC15.16■□□□□ 0.02
Nkx2-4Q9EQM3 Rab10os-207ENSMUST00000179924 823 ntTSL 5 BASIC15.16■□□□□ 0.02
Nkx2-4Q9EQM3 Gm27701-201ENSMUST00000184498 110 ntBASIC15.16■□□□□ 0.02
Nkx2-4Q9EQM3 Gm28911-201ENSMUST00000188837 117 ntBASIC15.16■□□□□ 0.02
Nkx2-4Q9EQM3 Platr12-202ENSMUST00000189722 549 ntTSL 3 BASIC15.16■□□□□ 0.02
Nkx2-4Q9EQM3 Gm43755-201ENSMUST00000200001 408 ntTSL 5 BASIC15.16■□□□□ 0.02
Nkx2-4Q9EQM3 Gm42846-201ENSMUST00000201771 514 ntTSL 3 BASIC15.16■□□□□ 0.02
Nkx2-4Q9EQM3 Spata33-205ENSMUST00000212523 486 ntTSL 3 BASIC15.16■□□□□ 0.02
Nkx2-4Q9EQM3 Apoa5-203ENSMUST00000213878 727 ntTSL 3 BASIC15.16■□□□□ 0.02
Nkx2-4Q9EQM3 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
Nkx2-4Q9EQM3 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Nkx2-4Q9EQM3 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Nkx2-4Q9EQM3 Kif7-201ENSMUST00000059836 4521 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Nkx2-4Q9EQM3 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Nkx2-4Q9EQM3 Slc44a1-201ENSMUST00000102911 3102 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Nkx2-4Q9EQM3 Wisp3-201ENSMUST00000076713 1419 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Nkx2-4Q9EQM3 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Nkx2-4Q9EQM3 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Nkx2-4Q9EQM3 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Nkx2-4Q9EQM3 Gm5105-201ENSMUST00000053318 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Nkx2-4Q9EQM3 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Nkx2-4Q9EQM3 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Nkx2-4Q9EQM3 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Nkx2-4Q9EQM3 Ntrk2-205ENSMUST00000224402 2284 ntBASIC15.15■□□□□ 0.02
Nkx2-4Q9EQM3 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Nkx2-4Q9EQM3 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Nkx2-4Q9EQM3 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Nkx2-4Q9EQM3 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Nkx2-4Q9EQM3 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Nkx2-4Q9EQM3 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
Nkx2-4Q9EQM3 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Nkx2-4Q9EQM3 Tbx3os1-203ENSMUST00000140101 490 ntTSL 3 BASIC15.15■□□□□ 0.02
Nkx2-4Q9EQM3 Slc2a9-207ENSMUST00000143758 1296 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Nkx2-4Q9EQM3 Fam219aos-201ENSMUST00000151164 708 ntTSL 2 BASIC15.15■□□□□ 0.02
Nkx2-4Q9EQM3 Syce3-202ENSMUST00000167959 480 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Nkx2-4Q9EQM3 Gm20753-201ENSMUST00000190105 545 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Nkx2-4Q9EQM3 Gm37933-201ENSMUST00000193964 981 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 47.4 ms