Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 1110038F14Rik-201ENSMUST00000071792 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Usp28Q5I043 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Usp28Q5I043 Furin-203ENSMUST00000122232 4286 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Usp28Q5I043 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Usp28Q5I043 Nrxn1-209ENSMUST00000161402 4953 ntTSL 5 BASIC16.92■□□□□ 0.3
Usp28Q5I043 Arhgef18-201ENSMUST00000004684 5271 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Usp28Q5I043 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Usp28Q5I043 Gm20708-201ENSMUST00000132298 1780 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
Usp28Q5I043 Rgs6-203ENSMUST00000185665 2201 ntAPPRIS P4 TSL 5 BASIC16.92■□□□□ 0.3
Usp28Q5I043 Aldh16a1-201ENSMUST00000107815 2685 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Usp28Q5I043 Cpne1-202ENSMUST00000109607 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Usp28Q5I043 Lrp6-201ENSMUST00000032322 9368 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Usp28Q5I043 Nedd4l-202ENSMUST00000163516 8163 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
Usp28Q5I043 Clcnka-201ENSMUST00000042617 2428 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Usp28Q5I043 Dbndd1-201ENSMUST00000176155 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Usp28Q5I043 Gm26882-201ENSMUST00000181611 1537 ntTSL 5 BASIC16.91■□□□□ 0.3
Usp28Q5I043 Sync-201ENSMUST00000102599 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Usp28Q5I043 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC16.91■□□□□ 0.3
Usp28Q5I043 Ppp1r3g-201ENSMUST00000132661 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Usp28Q5I043 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Usp28Q5I043 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC16.91■□□□□ 0.3
Usp28Q5I043 Gm7787-201ENSMUST00000216858 688 ntBASIC16.91■□□□□ 0.3
Usp28Q5I043 Lce1a2-201ENSMUST00000029530 715 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Usp28Q5I043 Isg15-201ENSMUST00000085425 756 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Usp28Q5I043 Rtf1-201ENSMUST00000028767 4664 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Usp28Q5I043 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Usp28Q5I043 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
Usp28Q5I043 Mef2d-204ENSMUST00000119251 3488 ntTSL 5 BASIC16.91■□□□□ 0.3
Usp28Q5I043 Mbp-202ENSMUST00000062446 2186 ntAPPRIS P4 TSL 1 (best) BASIC16.91■□□□□ 0.3
Usp28Q5I043 Osbpl10-201ENSMUST00000046627 1872 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Usp28Q5I043 Fnbp1-208ENSMUST00000113560 4726 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Usp28Q5I043 Gm10457-201ENSMUST00000222619 1906 ntTSL 2 BASIC16.9■□□□□ 0.3
Usp28Q5I043 Ints14-201ENSMUST00000037504 2837 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Usp28Q5I043 Kcnh4-201ENSMUST00000107361 3748 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
Usp28Q5I043 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
Usp28Q5I043 Adcy5-201ENSMUST00000114913 7007 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Usp28Q5I043 Gm7153-201ENSMUST00000117092 455 ntBASIC16.9■□□□□ 0.3
Usp28Q5I043 Gm17971-201ENSMUST00000190239 806 ntBASIC16.9■□□□□ 0.3
Usp28Q5I043 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
Usp28Q5I043 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Usp28Q5I043 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Usp28Q5I043 Gm10819-201ENSMUST00000099988 561 ntBASIC16.9■□□□□ 0.3
Usp28Q5I043 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Usp28Q5I043 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Usp28Q5I043 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Usp28Q5I043 Trp53rkb-203ENSMUST00000151826 4426 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Usp28Q5I043 Rcn3-201ENSMUST00000019683 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Usp28Q5I043 Rcn3-208ENSMUST00000211352 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Usp28Q5I043 Sh2b1-205ENSMUST00000205733 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Usp28Q5I043 Wsb1-201ENSMUST00000017821 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Usp28Q5I043 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Usp28Q5I043 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Usp28Q5I043 Zfp668-204ENSMUST00000106263 3132 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Usp28Q5I043 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC16.89■□□□□ 0.3
Usp28Q5I043 AC025913.2-201ENSMUST00000220136 1766 ntBASIC16.89■□□□□ 0.3
Usp28Q5I043 Rbm26-203ENSMUST00000163499 4212 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Usp28Q5I043 Mdfic-203ENSMUST00000125326 3635 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Usp28Q5I043 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Usp28Q5I043 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC16.89■□□□□ 0.29
Usp28Q5I043 Bag4-201ENSMUST00000038498 4876 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Usp28Q5I043 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Usp28Q5I043 Lims2-201ENSMUST00000025254 1870 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Usp28Q5I043 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Usp28Q5I043 Gm15598-201ENSMUST00000156965 763 ntTSL 5 BASIC16.89■□□□□ 0.29
Usp28Q5I043 Grtp1-201ENSMUST00000165605 1271 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Usp28Q5I043 Sap25-206ENSMUST00000177466 1005 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
Usp28Q5I043 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC16.89■□□□□ 0.29
Usp28Q5I043 Tmem270-202ENSMUST00000201316 847 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Usp28Q5I043 Mccc2-201ENSMUST00000022148 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Usp28Q5I043 Ndufv2-201ENSMUST00000024909 927 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Usp28Q5I043 Apoa1-201ENSMUST00000034588 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Usp28Q5I043 Tle3-210ENSMUST00000161207 2592 ntTSL 5 BASIC16.89■□□□□ 0.29
Usp28Q5I043 Mterf4-202ENSMUST00000112942 1525 ntTSL 2 BASIC16.89■□□□□ 0.29
Usp28Q5I043 Ctdp1-201ENSMUST00000036229 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Usp28Q5I043 Vta1-205ENSMUST00000154132 1974 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Usp28Q5I043 Bbs7-203ENSMUST00000108156 2687 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Usp28Q5I043 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Usp28Q5I043 Cald1-201ENSMUST00000031775 2142 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
Usp28Q5I043 Scube3-201ENSMUST00000043503 6699 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Usp28Q5I043 Sesn1-201ENSMUST00000041438 2600 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
Usp28Q5I043 Gng2-204ENSMUST00000160013 3826 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Usp28Q5I043 Gm5105-201ENSMUST00000053318 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Usp28Q5I043 Cacna1h-202ENSMUST00000159048 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Usp28Q5I043 Med15-201ENSMUST00000012259 3383 ntAPPRIS P4 TSL 1 (best) BASIC16.88■□□□□ 0.29
Usp28Q5I043 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Usp28Q5I043 Skida1-201ENSMUST00000066885 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Usp28Q5I043 Fundc1-201ENSMUST00000026016 1983 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Usp28Q5I043 Pls1-201ENSMUST00000093800 3704 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Usp28Q5I043 Miga1-202ENSMUST00000073089 4965 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Usp28Q5I043 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Usp28Q5I043 Zfp74-203ENSMUST00000108211 1278 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Usp28Q5I043 Zglp1-201ENSMUST00000115494 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Usp28Q5I043 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Usp28Q5I043 CT010506.4-201ENSMUST00000225457 351 ntBASIC16.88■□□□□ 0.29
Usp28Q5I043 Cmtm8-201ENSMUST00000047013 1064 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Usp28Q5I043 Mtus2-201ENSMUST00000071878 1211 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Usp28Q5I043 Ak1-203ENSMUST00000113278 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Usp28Q5I043 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Usp28Q5I043 Marveld2-203ENSMUST00000168772 1888 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
Usp28Q5I043 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 27.3 ms