Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
USP39Q53GS9 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
USP39Q53GS9 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC18.1■□□□□ 0.49
USP39Q53GS9 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
USP39Q53GS9 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
USP39Q53GS9 UROS-202ENST00000368778 1556 ntTSL 2 BASIC18.1■□□□□ 0.49
USP39Q53GS9 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
USP39Q53GS9 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
USP39Q53GS9 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC18.1■□□□□ 0.49
USP39Q53GS9 RBSN-204ENST00000449050 903 ntTSL 2 BASIC18.1■□□□□ 0.49
USP39Q53GS9 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC18.1■□□□□ 0.49
USP39Q53GS9 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC18.1■□□□□ 0.49
USP39Q53GS9 CD63-204ENST00000546939 779 ntTSL 3 BASIC18.1■□□□□ 0.49
USP39Q53GS9 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC18.1■□□□□ 0.49
USP39Q53GS9 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC18.1■□□□□ 0.49
USP39Q53GS9 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC18.1■□□□□ 0.49
USP39Q53GS9 FAM197Y3-203ENST00000618346 717 ntBASIC18.1■□□□□ 0.49
USP39Q53GS9 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
USP39Q53GS9 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
USP39Q53GS9 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
USP39Q53GS9 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
USP39Q53GS9 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC18.1■□□□□ 0.49
USP39Q53GS9 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC18.1■□□□□ 0.49
USP39Q53GS9 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC18.1■□□□□ 0.49
USP39Q53GS9 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
USP39Q53GS9 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC18.1■□□□□ 0.49
USP39Q53GS9 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
USP39Q53GS9 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC18.1■□□□□ 0.49
USP39Q53GS9 BICD1-207ENST00000551848 1962 ntBASIC18.1■□□□□ 0.49
USP39Q53GS9 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
USP39Q53GS9 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
USP39Q53GS9 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC18.09■□□□□ 0.49
USP39Q53GS9 NARF-204ENST00000390006 1766 ntTSL 2 BASIC18.09■□□□□ 0.49
USP39Q53GS9 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
USP39Q53GS9 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
USP39Q53GS9 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
USP39Q53GS9 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
USP39Q53GS9 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC18.09■□□□□ 0.49
USP39Q53GS9 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC18.09■□□□□ 0.49
USP39Q53GS9 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
USP39Q53GS9 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
USP39Q53GS9 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
USP39Q53GS9 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
USP39Q53GS9 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
USP39Q53GS9 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC18.09■□□□□ 0.49
USP39Q53GS9 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
USP39Q53GS9 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
USP39Q53GS9 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
USP39Q53GS9 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
USP39Q53GS9 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC18.09■□□□□ 0.49
USP39Q53GS9 CSF3-203ENST00000394148 622 ntTSL 3 BASIC18.09■□□□□ 0.49
USP39Q53GS9 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC18.09■□□□□ 0.49
USP39Q53GS9 RPS2P1-201ENST00000434010 821 ntBASIC18.09■□□□□ 0.49
USP39Q53GS9 AL591424.1-201ENST00000442569 1213 ntBASIC18.09■□□□□ 0.49
USP39Q53GS9 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC18.09■□□□□ 0.49
USP39Q53GS9 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC18.09■□□□□ 0.49
USP39Q53GS9 IGHV3-22-201ENST00000520721 359 ntBASIC18.09■□□□□ 0.49
USP39Q53GS9 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC18.09■□□□□ 0.49
USP39Q53GS9 AL691403.2-201ENST00000618460 490 ntBASIC18.09■□□□□ 0.49
USP39Q53GS9 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC18.09■□□□□ 0.49
USP39Q53GS9 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
USP39Q53GS9 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
USP39Q53GS9 AL390961.4-201ENST00000623958 2535 ntBASIC18.09■□□□□ 0.49
USP39Q53GS9 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
USP39Q53GS9 EFTUD1P1-204ENST00000560401 1798 ntBASIC18.09■□□□□ 0.49
USP39Q53GS9 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
USP39Q53GS9 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
USP39Q53GS9 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
USP39Q53GS9 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.49
USP39Q53GS9 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
USP39Q53GS9 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
USP39Q53GS9 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
USP39Q53GS9 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
USP39Q53GS9 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
USP39Q53GS9 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC18.08■□□□□ 0.49
USP39Q53GS9 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
USP39Q53GS9 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC18.08■□□□□ 0.49
USP39Q53GS9 AC125634.1-201ENST00000438758 1403 ntBASIC18.08■□□□□ 0.49
USP39Q53GS9 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
USP39Q53GS9 AL356309.3-201ENST00000624132 1934 ntBASIC18.08■□□□□ 0.49
USP39Q53GS9 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
USP39Q53GS9 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
USP39Q53GS9 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
USP39Q53GS9 MED15P5-201ENST00000423150 992 ntBASIC18.08■□□□□ 0.48
USP39Q53GS9 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC18.08■□□□□ 0.48
USP39Q53GS9 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC18.08■□□□□ 0.48
USP39Q53GS9 OR7E14P-202ENST00000530490 1290 ntBASIC18.08■□□□□ 0.48
USP39Q53GS9 SART3-203ENST00000546611 1184 ntBASIC18.08■□□□□ 0.48
USP39Q53GS9 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC18.08■□□□□ 0.48
USP39Q53GS9 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC18.08■□□□□ 0.48
USP39Q53GS9 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
USP39Q53GS9 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
USP39Q53GS9 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC18.08■□□□□ 0.48
USP39Q53GS9 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
USP39Q53GS9 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
USP39Q53GS9 SNAI3-AS1-205ENST00000568633 2096 ntBASIC18.08■□□□□ 0.48
USP39Q53GS9 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
USP39Q53GS9 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
USP39Q53GS9 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
USP39Q53GS9 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms