Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
VCANP13611 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
VCANP13611 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
VCANP13611 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VCANP13611 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
VCANP13611 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
VCANP13611 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VCANP13611 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
VCANP13611 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC18.29■□□□□ 0.52
VCANP13611 USB1-203ENST00000539737 1212 ntTSL 2 BASIC18.29■□□□□ 0.52
VCANP13611 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC18.29■□□□□ 0.52
VCANP13611 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC18.29■□□□□ 0.52
VCANP13611 AC019129.2-201ENST00000609837 1235 ntBASIC18.29■□□□□ 0.52
VCANP13611 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC18.29■□□□□ 0.52
VCANP13611 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC18.29■□□□□ 0.52
VCANP13611 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VCANP13611 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VCANP13611 NFYC-AS1-201ENST00000606277 1687 ntBASIC18.29■□□□□ 0.52
VCANP13611 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VCANP13611 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC18.28■□□□□ 0.52
VCANP13611 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC18.28■□□□□ 0.52
VCANP13611 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC18.28■□□□□ 0.52
VCANP13611 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC18.28■□□□□ 0.52
VCANP13611 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC18.28■□□□□ 0.52
VCANP13611 AC008667.4-201ENST00000607370 168 ntBASIC18.28■□□□□ 0.52
VCANP13611 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
VCANP13611 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VCANP13611 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
VCANP13611 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
VCANP13611 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
VCANP13611 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VCANP13611 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
VCANP13611 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
VCANP13611 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VCANP13611 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VCANP13611 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC18.28■□□□□ 0.52
VCANP13611 TMPRSS11CP-201ENST00000453277 683 ntBASIC18.28■□□□□ 0.52
VCANP13611 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC18.28■□□□□ 0.52
VCANP13611 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC18.28■□□□□ 0.52
VCANP13611 AC009118.2-201ENST00000613275 655 ntBASIC18.28■□□□□ 0.52
VCANP13611 MIR6727-201ENST00000620702 65 ntBASIC18.28■□□□□ 0.52
VCANP13611 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
VCANP13611 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VCANP13611 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC18.28■□□□□ 0.52
VCANP13611 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC18.28■□□□□ 0.52
VCANP13611 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VCANP13611 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
VCANP13611 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
VCANP13611 AL024508.2-201ENST00000607749 1894 ntBASIC18.28■□□□□ 0.52
VCANP13611 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
VCANP13611 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC18.28■□□□□ 0.52
VCANP13611 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VCANP13611 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC18.28■□□□□ 0.52
VCANP13611 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC18.28■□□□□ 0.52
VCANP13611 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC18.28■□□□□ 0.52
VCANP13611 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC18.28■□□□□ 0.52
VCANP13611 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
VCANP13611 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC18.28■□□□□ 0.52
VCANP13611 KRT8P48-201ENST00000515599 1220 ntBASIC18.28■□□□□ 0.52
VCANP13611 RPL28-206ENST00000558752 671 ntTSL 3 BASIC18.28■□□□□ 0.52
VCANP13611 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
VCANP13611 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
VCANP13611 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VCANP13611 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
VCANP13611 REXO1L6P-201ENST00000603433 1515 ntBASIC18.27■□□□□ 0.52
VCANP13611 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC18.27■□□□□ 0.52
VCANP13611 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
VCANP13611 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
VCANP13611 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC18.27■□□□□ 0.52
VCANP13611 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC18.27■□□□□ 0.52
VCANP13611 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
VCANP13611 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
VCANP13611 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC18.27■□□□□ 0.52
VCANP13611 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
VCANP13611 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
VCANP13611 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
VCANP13611 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC18.27■□□□□ 0.52
VCANP13611 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
VCANP13611 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
VCANP13611 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
VCANP13611 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
VCANP13611 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC18.27■□□□□ 0.52
VCANP13611 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
VCANP13611 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC18.27■□□□□ 0.51
VCANP13611 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
VCANP13611 BAD-207ENST00000544785 525 ntTSL 3 BASIC18.27■□□□□ 0.51
VCANP13611 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC18.27■□□□□ 0.51
VCANP13611 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
VCANP13611 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
VCANP13611 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VCANP13611 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VCANP13611 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
VCANP13611 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VCANP13611 AC073130.3-201ENST00000624389 2278 ntBASIC18.26■□□□□ 0.51
VCANP13611 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VCANP13611 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC18.26■□□□□ 0.51
VCANP13611 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VCANP13611 AL158211.3-201ENST00000607385 239 ntBASIC18.26■□□□□ 0.51
VCANP13611 SNX1-214ENST00000625244 324 ntTSL 5 BASIC18.26■□□□□ 0.51
VCANP13611 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms