Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Vps25-202ENSMUST00000042477 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trim47Q8C0E3 Rxfp4-201ENSMUST00000063119 1245 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
Trim47Q8C0E3 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC16.52■□□□□ 0.24
Trim47Q8C0E3 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trim47Q8C0E3 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
Trim47Q8C0E3 Zscan12-202ENSMUST00000099720 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trim47Q8C0E3 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trim47Q8C0E3 Syt6-201ENSMUST00000090697 4416 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
Trim47Q8C0E3 Rnf138-202ENSMUST00000072847 3002 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Trim47Q8C0E3 Guca1b-201ENSMUST00000024774 1668 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trim47Q8C0E3 Rnf207-201ENSMUST00000076183 2466 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trim47Q8C0E3 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trim47Q8C0E3 Cox16-201ENSMUST00000002757 2007 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trim47Q8C0E3 Wasf2-201ENSMUST00000084241 5642 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim47Q8C0E3 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim47Q8C0E3 Aanat-205ENSMUST00000153476 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim47Q8C0E3 Ercc1-201ENSMUST00000003645 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim47Q8C0E3 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim47Q8C0E3 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim47Q8C0E3 Dek-201ENSMUST00000021807 2556 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim47Q8C0E3 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim47Q8C0E3 CT010478.1-201ENSMUST00000220747 2787 ntBASIC16.51■□□□□ 0.23
Trim47Q8C0E3 AC154412.1-201ENSMUST00000226540 2786 ntBASIC16.51■□□□□ 0.23
Trim47Q8C0E3 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
Trim47Q8C0E3 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim47Q8C0E3 Tmub1-201ENSMUST00000030799 1333 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim47Q8C0E3 Oser1-202ENSMUST00000104954 1702 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim47Q8C0E3 Tmem38a-201ENSMUST00000034244 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim47Q8C0E3 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC16.51■□□□□ 0.23
Trim47Q8C0E3 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC16.51■□□□□ 0.23
Trim47Q8C0E3 Cyb561a3-201ENSMUST00000168445 1474 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Trim47Q8C0E3 CT025626.1-201ENSMUST00000223735 1455 ntBASIC16.51■□□□□ 0.23
Trim47Q8C0E3 Gm14701-201ENSMUST00000117156 348 ntBASIC16.51■□□□□ 0.23
Trim47Q8C0E3 Bola3-202ENSMUST00000120040 583 ntTSL 3 BASIC16.51■□□□□ 0.23
Trim47Q8C0E3 Gm43474-201ENSMUST00000196415 774 ntBASIC16.51■□□□□ 0.23
Trim47Q8C0E3 Gm8396-201ENSMUST00000057361 823 ntBASIC16.51■□□□□ 0.23
Trim47Q8C0E3 1600017P15Rik-201ENSMUST00000083427 412 ntBASIC16.51■□□□□ 0.23
Trim47Q8C0E3 Kif26a-201ENSMUST00000128402 6918 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim47Q8C0E3 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim47Q8C0E3 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Trim47Q8C0E3 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim47Q8C0E3 Gm13233-201ENSMUST00000118760 1443 ntBASIC16.51■□□□□ 0.23
Trim47Q8C0E3 Gm13244-201ENSMUST00000118855 1446 ntBASIC16.51■□□□□ 0.23
Trim47Q8C0E3 Magi1-201ENSMUST00000055224 7007 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Trim47Q8C0E3 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Trim47Q8C0E3 Tcf21-202ENSMUST00000218002 1788 ntBASIC16.51■□□□□ 0.23
Trim47Q8C0E3 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC16.51■□□□□ 0.23
Trim47Q8C0E3 Coq6-203ENSMUST00000110278 1354 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
Trim47Q8C0E3 Adam23-201ENSMUST00000087374 6426 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim47Q8C0E3 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
Trim47Q8C0E3 Teddm2-202ENSMUST00000123490 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim47Q8C0E3 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim47Q8C0E3 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim47Q8C0E3 Cobl-203ENSMUST00000109651 5541 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim47Q8C0E3 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC16.5■□□□□ 0.23
Trim47Q8C0E3 Tex30-213ENSMUST00000156392 1122 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
Trim47Q8C0E3 AC166341.4-201ENSMUST00000220625 123 ntBASIC16.5■□□□□ 0.23
Trim47Q8C0E3 Prdx4-201ENSMUST00000026328 990 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim47Q8C0E3 Olfr324-201ENSMUST00000054683 1122 ntAPPRIS P2 BASIC16.5■□□□□ 0.23
Trim47Q8C0E3 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC16.5■□□□□ 0.23
Trim47Q8C0E3 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim47Q8C0E3 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC16.5■□□□□ 0.23
Trim47Q8C0E3 Slc44a5-201ENSMUST00000089948 4098 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim47Q8C0E3 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim47Q8C0E3 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim47Q8C0E3 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Trim47Q8C0E3 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Trim47Q8C0E3 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Trim47Q8C0E3 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim47Q8C0E3 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Trim47Q8C0E3 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Trim47Q8C0E3 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Trim47Q8C0E3 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Trim47Q8C0E3 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim47Q8C0E3 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim47Q8C0E3 AC164565.1-201ENSMUST00000217520 1484 ntBASIC16.49■□□□□ 0.23
Trim47Q8C0E3 Gm14026-201ENSMUST00000120625 1789 ntBASIC16.49■□□□□ 0.23
Trim47Q8C0E3 Dlgap1-207ENSMUST00000133983 7173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim47Q8C0E3 Hnf4a-201ENSMUST00000018094 4356 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim47Q8C0E3 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC16.49■□□□□ 0.23
Trim47Q8C0E3 Crem-221ENSMUST00000142690 1256 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Trim47Q8C0E3 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC16.49■□□□□ 0.23
Trim47Q8C0E3 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC16.49■□□□□ 0.23
Trim47Q8C0E3 Elof1-203ENSMUST00000213233 810 ntAPPRIS P1 TSL 3 BASIC16.49■□□□□ 0.23
Trim47Q8C0E3 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim47Q8C0E3 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim47Q8C0E3 Fam102a-201ENSMUST00000048375 4223 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim47Q8C0E3 Tmcc3-201ENSMUST00000065060 5530 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim47Q8C0E3 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
Trim47Q8C0E3 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim47Q8C0E3 Ralb-201ENSMUST00000004565 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim47Q8C0E3 P4ha2-202ENSMUST00000093107 2263 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Trim47Q8C0E3 Krt25-201ENSMUST00000038004 1989 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim47Q8C0E3 Sesn3-201ENSMUST00000034507 1827 ntTSL 5 BASIC16.49■□□□□ 0.23
Trim47Q8C0E3 Nkd2-202ENSMUST00000118096 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim47Q8C0E3 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim47Q8C0E3 Egfl7-212ENSMUST00000166920 1391 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim47Q8C0E3 Rhpn1-201ENSMUST00000023244 1932 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim47Q8C0E3 Csnk2a2-201ENSMUST00000056919 3773 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim47Q8C0E3 Xpo6-201ENSMUST00000009344 4455 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 32.4 ms