Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ABCA4P78363 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC15.32■□□□□ 0.04
ABCA4P78363 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC15.32■□□□□ 0.04
ABCA4P78363 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC15.32■□□□□ 0.04
ABCA4P78363 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ABCA4P78363 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ABCA4P78363 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
ABCA4P78363 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC15.31■□□□□ 0.04
ABCA4P78363 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC15.31■□□□□ 0.04
ABCA4P78363 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
ABCA4P78363 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
ABCA4P78363 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
ABCA4P78363 ADM-207ENST00000530439 1839 ntTSL 2 BASIC15.31■□□□□ 0.04
ABCA4P78363 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ABCA4P78363 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
ABCA4P78363 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
ABCA4P78363 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ABCA4P78363 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC15.31■□□□□ 0.04
ABCA4P78363 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
ABCA4P78363 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC15.31■□□□□ 0.04
ABCA4P78363 COX5A-202ENST00000562233 441 ntTSL 3 BASIC15.31■□□□□ 0.04
ABCA4P78363 AC040169.1-201ENST00000565382 521 ntBASIC15.31■□□□□ 0.04
ABCA4P78363 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC15.31■□□□□ 0.04
ABCA4P78363 RNF151-202ENST00000569210 853 ntTSL 2 BASIC15.31■□□□□ 0.04
ABCA4P78363 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC15.31■□□□□ 0.04
ABCA4P78363 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ABCA4P78363 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
ABCA4P78363 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC15.31■□□□□ 0.04
ABCA4P78363 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ABCA4P78363 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ABCA4P78363 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ABCA4P78363 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ABCA4P78363 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
ABCA4P78363 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ABCA4P78363 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ABCA4P78363 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC15.31■□□□□ 0.04
ABCA4P78363 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
ABCA4P78363 CENPM-204ENST00000402420 688 ntTSL 5 BASIC15.31■□□□□ 0.04
ABCA4P78363 PON3-203ENST00000427422 894 ntTSL 3 BASIC15.31■□□□□ 0.04
ABCA4P78363 AP006288.1-201ENST00000446065 395 ntBASIC15.31■□□□□ 0.04
ABCA4P78363 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC15.31■□□□□ 0.04
ABCA4P78363 AC092910.1-201ENST00000482027 1129 ntBASIC15.31■□□□□ 0.04
ABCA4P78363 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
ABCA4P78363 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ABCA4P78363 TCAP-202ENST00000578283 583 ntTSL 5 BASIC15.31■□□□□ 0.04
ABCA4P78363 MIR3197-201ENST00000582241 73 ntBASIC15.31■□□□□ 0.04
ABCA4P78363 AC092364.2-202ENST00000597012 1073 ntBASIC15.31■□□□□ 0.04
ABCA4P78363 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC15.31■□□□□ 0.04
ABCA4P78363 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
ABCA4P78363 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC15.3■□□□□ 0.04
ABCA4P78363 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC15.3■□□□□ 0.04
ABCA4P78363 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
ABCA4P78363 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
ABCA4P78363 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
ABCA4P78363 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
ABCA4P78363 GMCL1P1-201ENST00000463439 1581 ntBASIC15.3■□□□□ 0.04
ABCA4P78363 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC15.3■□□□□ 0.04
ABCA4P78363 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
ABCA4P78363 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
ABCA4P78363 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
ABCA4P78363 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
ABCA4P78363 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
ABCA4P78363 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
ABCA4P78363 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
ABCA4P78363 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
ABCA4P78363 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
ABCA4P78363 CNN2P11-201ENST00000429351 262 ntBASIC15.3■□□□□ 0.04
ABCA4P78363 AC009947.1-201ENST00000444350 727 ntBASIC15.3■□□□□ 0.04
ABCA4P78363 AC108751.1-201ENST00000490852 363 ntBASIC15.3■□□□□ 0.04
ABCA4P78363 AC112482.1-201ENST00000492080 688 ntBASIC15.3■□□□□ 0.04
ABCA4P78363 AC009533.2-201ENST00000543664 586 ntBASIC15.3■□□□□ 0.04
ABCA4P78363 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC15.3■□□□□ 0.04
ABCA4P78363 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC15.3■□□□□ 0.04
ABCA4P78363 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC15.3■□□□□ 0.04
ABCA4P78363 AC006557.2-201ENST00000592985 1240 ntBASIC15.3■□□□□ 0.04
ABCA4P78363 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
ABCA4P78363 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC15.3■□□□□ 0.04
ABCA4P78363 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC15.3■□□□□ 0.04
ABCA4P78363 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC15.3■□□□□ 0.04
ABCA4P78363 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
ABCA4P78363 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC15.3■□□□□ 0.04
ABCA4P78363 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
ABCA4P78363 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
ABCA4P78363 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
ABCA4P78363 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
ABCA4P78363 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
ABCA4P78363 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
ABCA4P78363 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
ABCA4P78363 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC15.3■□□□□ 0.04
ABCA4P78363 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
ABCA4P78363 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
ABCA4P78363 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
ABCA4P78363 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC15.29■□□□□ 0.04
ABCA4P78363 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC15.29■□□□□ 0.04
ABCA4P78363 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
ABCA4P78363 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
ABCA4P78363 AC018845.2-201ENST00000568326 409 ntBASIC15.29■□□□□ 0.04
ABCA4P78363 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
ABCA4P78363 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
ABCA4P78363 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms