Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Pih1d1-206ENSMUST00000210139 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Prpf40aQ9R1C7 Gm7787-201ENSMUST00000216858 688 ntBASIC16.56■□□□□ 0.24
Prpf40aQ9R1C7 Prss48-201ENSMUST00000061343 949 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Prpf40aQ9R1C7 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
Prpf40aQ9R1C7 Grin1os-201ENSMUST00000129723 2891 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Prpf40aQ9R1C7 Adam23-204ENSMUST00000114103 2655 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
Prpf40aQ9R1C7 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Prpf40aQ9R1C7 Myo9b-201ENSMUST00000071935 7082 ntAPPRIS P3 TSL 5 BASIC16.56■□□□□ 0.24
Prpf40aQ9R1C7 Sirpa-203ENSMUST00000103202 3982 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
Prpf40aQ9R1C7 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Prpf40aQ9R1C7 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Prpf40aQ9R1C7 Zfp358-203ENSMUST00000208423 2200 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
Prpf40aQ9R1C7 Sympk-201ENSMUST00000023882 4116 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Prpf40aQ9R1C7 Col4a1-201ENSMUST00000033898 6615 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Prpf40aQ9R1C7 Dnm1-204ENSMUST00000113352 4605 ntAPPRIS ALT1 TSL 2 BASIC16.55■□□□□ 0.24
Prpf40aQ9R1C7 Nmur1-203ENSMUST00000212541 1534 ntTSL 5 BASIC16.55■□□□□ 0.24
Prpf40aQ9R1C7 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Prpf40aQ9R1C7 Hsph1-209ENSMUST00000202089 3054 ntTSL 5 BASIC16.55■□□□□ 0.24
Prpf40aQ9R1C7 Atg9a-208ENSMUST00000189702 4110 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
Prpf40aQ9R1C7 Dock4-201ENSMUST00000037488 8552 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Prpf40aQ9R1C7 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Prpf40aQ9R1C7 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC16.55■□□□□ 0.24
Prpf40aQ9R1C7 AC138767.1-201ENSMUST00000222661 415 ntBASIC16.55■□□□□ 0.24
Prpf40aQ9R1C7 Gsdmcl1-201ENSMUST00000071847 1133 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Prpf40aQ9R1C7 Suv39h2-201ENSMUST00000027956 4327 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Prpf40aQ9R1C7 C2cd2l-201ENSMUST00000065080 4337 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Prpf40aQ9R1C7 Tmem81-202ENSMUST00000188789 1751 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
Prpf40aQ9R1C7 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Prpf40aQ9R1C7 Rusc2-207ENSMUST00000131668 5093 ntTSL 5 BASIC16.55■□□□□ 0.24
Prpf40aQ9R1C7 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Prpf40aQ9R1C7 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Prpf40aQ9R1C7 Dnmt3b-210ENSMUST00000109774 4320 ntAPPRIS P4 TSL 1 (best) BASIC16.55■□□□□ 0.24
Prpf40aQ9R1C7 Col5a3-201ENSMUST00000004201 6119 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Prpf40aQ9R1C7 Dlgap4-204ENSMUST00000109566 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Prpf40aQ9R1C7 Nf2-201ENSMUST00000053079 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Prpf40aQ9R1C7 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Prpf40aQ9R1C7 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Prpf40aQ9R1C7 Zfp24-203ENSMUST00000153337 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Prpf40aQ9R1C7 Gm26547-201ENSMUST00000181186 1508 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Prpf40aQ9R1C7 Grk6-207ENSMUST00000225925 2769 ntBASIC16.55■□□□□ 0.24
Prpf40aQ9R1C7 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Prpf40aQ9R1C7 Itga8-201ENSMUST00000028106 5812 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Prpf40aQ9R1C7 Wdr90-201ENSMUST00000079461 5991 ntAPPRIS P2 TSL 5 BASIC16.54■□□□□ 0.24
Prpf40aQ9R1C7 Senp6-202ENSMUST00000164859 3853 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Prpf40aQ9R1C7 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
Prpf40aQ9R1C7 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Prpf40aQ9R1C7 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Prpf40aQ9R1C7 1700039E22Rik-201ENSMUST00000174082 770 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Prpf40aQ9R1C7 4930519L02Rik-201ENSMUST00000197683 619 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Prpf40aQ9R1C7 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
Prpf40aQ9R1C7 4931406C07Rik-209ENSMUST00000217042 691 ntTSL 3 BASIC16.54■□□□□ 0.24
Prpf40aQ9R1C7 Gm2270-201ENSMUST00000222858 797 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Prpf40aQ9R1C7 Bpifa3-201ENSMUST00000028984 1107 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
Prpf40aQ9R1C7 Rpl8-201ENSMUST00000004072 862 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Prpf40aQ9R1C7 Ly6k-201ENSMUST00000060301 791 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Prpf40aQ9R1C7 Pcdha1-201ENSMUST00000070797 5248 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Prpf40aQ9R1C7 Gm5049-201ENSMUST00000195878 1590 ntBASIC16.54■□□□□ 0.24
Prpf40aQ9R1C7 Parm1-201ENSMUST00000040576 5068 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Prpf40aQ9R1C7 Itsn1-202ENSMUST00000064797 7418 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
Prpf40aQ9R1C7 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Prpf40aQ9R1C7 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Prpf40aQ9R1C7 Gm37812-201ENSMUST00000195216 2475 ntBASIC16.54■□□□□ 0.24
Prpf40aQ9R1C7 Aldh1a3-203ENSMUST00000174209 1496 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Prpf40aQ9R1C7 Ubn2-201ENSMUST00000039127 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Prpf40aQ9R1C7 Syde2-204ENSMUST00000212479 3810 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
Prpf40aQ9R1C7 AC154527.4-201ENSMUST00000224364 1667 ntBASIC16.53■□□□□ 0.24
Prpf40aQ9R1C7 Ppp1r15b-201ENSMUST00000052529 5594 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Prpf40aQ9R1C7 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Prpf40aQ9R1C7 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Prpf40aQ9R1C7 Tgfbr3-201ENSMUST00000031224 6087 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Prpf40aQ9R1C7 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Prpf40aQ9R1C7 Gm11453-201ENSMUST00000117318 1007 ntBASIC16.53■□□□□ 0.24
Prpf40aQ9R1C7 Ftl2-ps-201ENSMUST00000118517 552 ntBASIC16.53■□□□□ 0.24
Prpf40aQ9R1C7 Timm23-201ENSMUST00000013845 1173 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Prpf40aQ9R1C7 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC16.53■□□□□ 0.24
Prpf40aQ9R1C7 Fhad1os2-201ENSMUST00000152351 945 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Prpf40aQ9R1C7 Gm26695-201ENSMUST00000180920 1251 ntTSL 5 BASIC16.53■□□□□ 0.24
Prpf40aQ9R1C7 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC16.53■□□□□ 0.24
Prpf40aQ9R1C7 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC16.53■□□□□ 0.24
Prpf40aQ9R1C7 Gm29179-208ENSMUST00000190450 1137 ntTSL 5 BASIC16.53■□□□□ 0.24
Prpf40aQ9R1C7 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC16.53■□□□□ 0.24
Prpf40aQ9R1C7 Bhlha9-201ENSMUST00000056184 1207 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
Prpf40aQ9R1C7 Gm15590-201ENSMUST00000078419 552 ntBASIC16.53■□□□□ 0.24
Prpf40aQ9R1C7 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Prpf40aQ9R1C7 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Prpf40aQ9R1C7 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Prpf40aQ9R1C7 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Prpf40aQ9R1C7 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Prpf40aQ9R1C7 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Prpf40aQ9R1C7 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Prpf40aQ9R1C7 Tead2-203ENSMUST00000107801 3396 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Prpf40aQ9R1C7 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Prpf40aQ9R1C7 Tle1-203ENSMUST00000074216 4369 ntAPPRIS ALT1 TSL 5 BASIC16.53■□□□□ 0.24
Prpf40aQ9R1C7 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Prpf40aQ9R1C7 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Prpf40aQ9R1C7 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
Prpf40aQ9R1C7 Adgrd2-ps-201ENSMUST00000118797 2662 ntBASIC16.53■□□□□ 0.24
Prpf40aQ9R1C7 Zfp703-202ENSMUST00000154256 3152 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Prpf40aQ9R1C7 Pus1-204ENSMUST00000112426 1389 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Prpf40aQ9R1C7 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 29.8 ms