Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Chdh-201ENSMUST00000067620 5690 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ptchd3Q0EEE2 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Ptchd3Q0EEE2 Nfatc1-204ENSMUST00000170905 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ptchd3Q0EEE2 Col7a1-202ENSMUST00000112070 9250 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
Ptchd3Q0EEE2 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ptchd3Q0EEE2 Ccdc88c-202ENSMUST00000085096 6313 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
Ptchd3Q0EEE2 Wwp2-205ENSMUST00000212543 1996 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Ptchd3Q0EEE2 Atf7-202ENSMUST00000108828 2887 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Ptchd3Q0EEE2 Casz1-202ENSMUST00000122222 7926 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
Ptchd3Q0EEE2 Dek-201ENSMUST00000021807 2556 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ptchd3Q0EEE2 Zfp628-201ENSMUST00000116354 3523 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ptchd3Q0EEE2 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ptchd3Q0EEE2 Gm26852-201ENSMUST00000180691 5751 ntTSL 5 BASIC14.56□□□□□ -0.08
Ptchd3Q0EEE2 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
Ptchd3Q0EEE2 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC14.56□□□□□ -0.08
Ptchd3Q0EEE2 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC14.56□□□□□ -0.08
Ptchd3Q0EEE2 Ank1-201ENSMUST00000033947 1030 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Ptchd3Q0EEE2 Klhl11-201ENSMUST00000056665 2393 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ptchd3Q0EEE2 Kcnip4-201ENSMUST00000087395 2366 ntTSL 5 BASIC14.56□□□□□ -0.08
Ptchd3Q0EEE2 Cobl-201ENSMUST00000046755 5615 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ptchd3Q0EEE2 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Ptchd3Q0EEE2 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ptchd3Q0EEE2 Pcdha8-201ENSMUST00000194038 5338 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ptchd3Q0EEE2 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
Ptchd3Q0EEE2 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ptchd3Q0EEE2 Lpcat1-208ENSMUST00000223060 2141 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Ptchd3Q0EEE2 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ptchd3Q0EEE2 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ptchd3Q0EEE2 Sema4b-204ENSMUST00000205822 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ptchd3Q0EEE2 Epha1-201ENSMUST00000073387 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ptchd3Q0EEE2 Fam169b-206ENSMUST00000210558 2815 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
Ptchd3Q0EEE2 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC14.55□□□□□ -0.08
Ptchd3Q0EEE2 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Ptchd3Q0EEE2 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Ptchd3Q0EEE2 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC14.55□□□□□ -0.08
Ptchd3Q0EEE2 Gm44454-201ENSMUST00000198541 138 ntBASIC14.55□□□□□ -0.08
Ptchd3Q0EEE2 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC14.55□□□□□ -0.08
Ptchd3Q0EEE2 AC124569.2-201ENSMUST00000225998 818 ntBASIC14.55□□□□□ -0.08
Ptchd3Q0EEE2 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ptchd3Q0EEE2 Hgfac-201ENSMUST00000030985 2135 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ptchd3Q0EEE2 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ptchd3Q0EEE2 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ptchd3Q0EEE2 Fbxo41-201ENSMUST00000159062 6505 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ptchd3Q0EEE2 Lap3-201ENSMUST00000046122 2267 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ptchd3Q0EEE2 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ptchd3Q0EEE2 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Ptchd3Q0EEE2 Map3k9-202ENSMUST00000222322 3303 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
Ptchd3Q0EEE2 Pde4dip-201ENSMUST00000045243 6185 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ptchd3Q0EEE2 Dhx34-203ENSMUST00000119102 4310 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
Ptchd3Q0EEE2 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ptchd3Q0EEE2 Chuk-201ENSMUST00000026217 3502 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ptchd3Q0EEE2 Fbxl12-205ENSMUST00000140702 1555 ntBASIC14.55□□□□□ -0.08
Ptchd3Q0EEE2 Arid3a-203ENSMUST00000105377 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ptchd3Q0EEE2 Mybl1-201ENSMUST00000088658 4980 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ptchd3Q0EEE2 Rcbtb1-202ENSMUST00000043227 3903 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ptchd3Q0EEE2 Hykk-201ENSMUST00000039742 5110 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ptchd3Q0EEE2 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Ptchd3Q0EEE2 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ptchd3Q0EEE2 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ptchd3Q0EEE2 Rps6ka5-201ENSMUST00000043599 4406 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ptchd3Q0EEE2 Fbxl19-203ENSMUST00000186207 3178 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ptchd3Q0EEE2 Iqcm-201ENSMUST00000034033 2014 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ptchd3Q0EEE2 Zfp612-202ENSMUST00000212754 4863 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ptchd3Q0EEE2 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ptchd3Q0EEE2 Leng9-201ENSMUST00000058358 2460 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
Ptchd3Q0EEE2 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ptchd3Q0EEE2 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC14.54□□□□□ -0.08
Ptchd3Q0EEE2 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Ptchd3Q0EEE2 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ptchd3Q0EEE2 Gm17807-201ENSMUST00000186869 298 ntBASIC14.54□□□□□ -0.08
Ptchd3Q0EEE2 1700016B15Rik-201ENSMUST00000209027 733 ntBASIC14.54□□□□□ -0.08
Ptchd3Q0EEE2 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC14.54□□□□□ -0.08
Ptchd3Q0EEE2 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC14.54□□□□□ -0.08
Ptchd3Q0EEE2 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Ptchd3Q0EEE2 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ptchd3Q0EEE2 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ptchd3Q0EEE2 Polr3d-202ENSMUST00000180358 2032 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ptchd3Q0EEE2 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Ptchd3Q0EEE2 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC14.54□□□□□ -0.08
Ptchd3Q0EEE2 Fam169b-202ENSMUST00000125685 2821 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ptchd3Q0EEE2 Chtf18-201ENSMUST00000048054 3214 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ptchd3Q0EEE2 Dmtn-202ENSMUST00000022695 4080 ntTSL 5 BASIC14.54□□□□□ -0.08
Ptchd3Q0EEE2 Dnmt3b-210ENSMUST00000109774 4320 ntAPPRIS P4 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ptchd3Q0EEE2 Trib1-201ENSMUST00000067543 4330 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ptchd3Q0EEE2 Asap1-216ENSMUST00000177083 4415 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ptchd3Q0EEE2 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ptchd3Q0EEE2 Frmd4b-203ENSMUST00000113355 4913 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Ptchd3Q0EEE2 Plod2-201ENSMUST00000070522 3649 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ptchd3Q0EEE2 Tbx15-201ENSMUST00000029462 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ptchd3Q0EEE2 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ptchd3Q0EEE2 Zdhhc7-201ENSMUST00000034280 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ptchd3Q0EEE2 Smarce1-201ENSMUST00000103133 2919 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ptchd3Q0EEE2 Grk6-207ENSMUST00000225925 2769 ntBASIC14.53□□□□□ -0.08
Ptchd3Q0EEE2 Gm10010-201ENSMUST00000071101 2346 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Ptchd3Q0EEE2 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ptchd3Q0EEE2 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ptchd3Q0EEE2 Myrf-201ENSMUST00000088013 5674 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Ptchd3Q0EEE2 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Ptchd3Q0EEE2 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ptchd3Q0EEE2 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 36.1 ms