Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
SCN4AP35499 AC112191.1-201ENST00000523689 701 ntBASIC21.08■□□□□ 0.96
SCN4AP35499 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
SCN4AP35499 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC21.08■□□□□ 0.96
SCN4AP35499 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC21.08■□□□□ 0.96
SCN4AP35499 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
SCN4AP35499 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SCN4AP35499 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
SCN4AP35499 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
SCN4AP35499 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SCN4AP35499 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC21.07■□□□□ 0.96
SCN4AP35499 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SCN4AP35499 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
SCN4AP35499 NABP1-203ENST00000409510 843 ntTSL 5 BASIC21.07■□□□□ 0.96
SCN4AP35499 TFAMP1-201ENST00000412727 736 ntBASIC21.07■□□□□ 0.96
SCN4AP35499 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC21.07■□□□□ 0.96
SCN4AP35499 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SCN4AP35499 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC21.07■□□□□ 0.96
SCN4AP35499 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SCN4AP35499 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC21.07■□□□□ 0.96
SCN4AP35499 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
SCN4AP35499 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SCN4AP35499 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC21.07■□□□□ 0.96
SCN4AP35499 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SCN4AP35499 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC21.07■□□□□ 0.96
SCN4AP35499 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC21.07■□□□□ 0.96
SCN4AP35499 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SCN4AP35499 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC21.07■□□□□ 0.96
SCN4AP35499 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SCN4AP35499 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC21.06■□□□□ 0.96
SCN4AP35499 OR8S1-201ENST00000310194 1080 ntBASIC21.06■□□□□ 0.96
SCN4AP35499 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SCN4AP35499 DDX43P3-201ENST00000441064 443 ntBASIC21.06■□□□□ 0.96
SCN4AP35499 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC21.06■□□□□ 0.96
SCN4AP35499 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC21.06■□□□□ 0.96
SCN4AP35499 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC21.06■□□□□ 0.96
SCN4AP35499 COX11-202ENST00000571584 1108 ntTSL 2 BASIC21.06■□□□□ 0.96
SCN4AP35499 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC21.06■□□□□ 0.96
SCN4AP35499 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC21.06■□□□□ 0.96
SCN4AP35499 SLC25A24-204ENST00000569674 2357 ntBASIC21.06■□□□□ 0.96
SCN4AP35499 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC21.06■□□□□ 0.96
SCN4AP35499 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
SCN4AP35499 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
SCN4AP35499 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
SCN4AP35499 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC21.06■□□□□ 0.96
SCN4AP35499 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC21.06■□□□□ 0.96
SCN4AP35499 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC21.06■□□□□ 0.96
SCN4AP35499 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SCN4AP35499 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SCN4AP35499 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC21.06■□□□□ 0.96
SCN4AP35499 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SCN4AP35499 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SCN4AP35499 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SCN4AP35499 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC21.06■□□□□ 0.96
SCN4AP35499 AC055876.3-201ENST00000431496 288 ntBASIC21.06■□□□□ 0.96
SCN4AP35499 SPDYE11-202ENST00000450699 704 ntBASIC21.06■□□□□ 0.96
SCN4AP35499 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC21.06■□□□□ 0.96
SCN4AP35499 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC21.06■□□□□ 0.96
SCN4AP35499 SPDYE9P-201ENST00000570642 692 ntBASIC21.06■□□□□ 0.96
SCN4AP35499 CECR7-204ENST00000609932 568 ntTSL 2 BASIC21.06■□□□□ 0.96
SCN4AP35499 SPDYE10P-202ENST00000612005 668 ntBASIC21.06■□□□□ 0.96
SCN4AP35499 AC138649.4-201ENST00000612222 287 ntBASIC21.06■□□□□ 0.96
SCN4AP35499 SPDYE8P-202ENST00000612377 668 ntBASIC21.06■□□□□ 0.96
SCN4AP35499 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
SCN4AP35499 REXO1L3P-201ENST00000622202 1288 ntBASIC21.06■□□□□ 0.96
SCN4AP35499 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC21.06■□□□□ 0.96
SCN4AP35499 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SCN4AP35499 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
SCN4AP35499 AL499627.1-201ENST00000569373 2188 ntBASIC21.05■□□□□ 0.96
SCN4AP35499 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
SCN4AP35499 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC21.05■□□□□ 0.96
SCN4AP35499 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SCN4AP35499 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
SCN4AP35499 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SCN4AP35499 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC21.05■□□□□ 0.96
SCN4AP35499 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
SCN4AP35499 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC21.05■□□□□ 0.96
SCN4AP35499 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SCN4AP35499 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC21.05■□□□□ 0.96
SCN4AP35499 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC21.05■□□□□ 0.96
SCN4AP35499 CNN2P2-201ENST00000443536 909 ntBASIC21.05■□□□□ 0.96
SCN4AP35499 CRB3P1-201ENST00000449338 276 ntBASIC21.05■□□□□ 0.96
SCN4AP35499 CNN2P3-201ENST00000450201 906 ntBASIC21.05■□□□□ 0.96
SCN4AP35499 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC21.05■□□□□ 0.96
SCN4AP35499 UGT1A2P-201ENST00000454886 866 ntBASIC21.05■□□□□ 0.96
SCN4AP35499 AC069335.1-201ENST00000489972 472 ntBASIC21.05■□□□□ 0.96
SCN4AP35499 AC099522.2-201ENST00000607001 744 ntBASIC21.05■□□□□ 0.96
SCN4AP35499 AL136317.3-201ENST00000618497 906 ntBASIC21.05■□□□□ 0.96
SCN4AP35499 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SCN4AP35499 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SCN4AP35499 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SCN4AP35499 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SCN4AP35499 AC092919.2-201ENST00000623631 1645 ntBASIC21.05■□□□□ 0.96
SCN4AP35499 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SCN4AP35499 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC21.05■□□□□ 0.96
SCN4AP35499 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
SCN4AP35499 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC21.04■□□□□ 0.96
SCN4AP35499 VMA21-202ENST00000370361 693 ntTSL 5 BASIC21.04■□□□□ 0.96
SCN4AP35499 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
SCN4AP35499 TIMM8BP1-201ENST00000452384 211 ntBASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms