Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Sh3rf1Q69ZI1 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Sh3rf1Q69ZI1 Hps1-204ENSMUST00000160455 2952 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Sh3rf1Q69ZI1 Caprin2-201ENSMUST00000072324 2952 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Sh3rf1Q69ZI1 Mapk8ip3-203ENSMUST00000115229 5603 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Sh3rf1Q69ZI1 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Sh3rf1Q69ZI1 Rragb-201ENSMUST00000039720 2258 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Sh3rf1Q69ZI1 Klf15-203ENSMUST00000203039 2482 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Sh3rf1Q69ZI1 Chodl-201ENSMUST00000023568 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Sh3rf1Q69ZI1 Gm11594-201ENSMUST00000122313 162 ntBASIC15.31■□□□□ 0.04
Sh3rf1Q69ZI1 Mir6404-201ENSMUST00000183699 94 ntBASIC15.31■□□□□ 0.04
Sh3rf1Q69ZI1 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC15.31■□□□□ 0.04
Sh3rf1Q69ZI1 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Sh3rf1Q69ZI1 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Sh3rf1Q69ZI1 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Sh3rf1Q69ZI1 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Sh3rf1Q69ZI1 Syn2-201ENSMUST00000009538 2708 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
Sh3rf1Q69ZI1 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Sh3rf1Q69ZI1 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC15.31■□□□□ 0.04
Sh3rf1Q69ZI1 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Sh3rf1Q69ZI1 Elavl3-201ENSMUST00000003501 5014 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Sh3rf1Q69ZI1 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Sh3rf1Q69ZI1 Arhgef18-201ENSMUST00000004684 5271 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Sh3rf1Q69ZI1 A430034D21Rik-201ENSMUST00000194339 1802 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Sh3rf1Q69ZI1 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Sh3rf1Q69ZI1 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Sh3rf1Q69ZI1 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Sh3rf1Q69ZI1 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Sh3rf1Q69ZI1 Gm26578-201ENSMUST00000181702 4611 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Sh3rf1Q69ZI1 Gm4756-202ENSMUST00000208039 2344 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Sh3rf1Q69ZI1 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Sh3rf1Q69ZI1 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Sh3rf1Q69ZI1 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Sh3rf1Q69ZI1 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC15.3■□□□□ 0.04
Sh3rf1Q69ZI1 1700039E22Rik-201ENSMUST00000174082 770 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Sh3rf1Q69ZI1 Mir5126-201ENSMUST00000175513 77 ntBASIC15.3■□□□□ 0.04
Sh3rf1Q69ZI1 Gm4535-201ENSMUST00000182274 558 ntBASIC15.3■□□□□ 0.04
Sh3rf1Q69ZI1 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Sh3rf1Q69ZI1 Gm8000-201ENSMUST00000188378 592 ntBASIC15.3■□□□□ 0.04
Sh3rf1Q69ZI1 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Sh3rf1Q69ZI1 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC15.3■□□□□ 0.04
Sh3rf1Q69ZI1 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC15.3■□□□□ 0.04
Sh3rf1Q69ZI1 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Sh3rf1Q69ZI1 Cep170b-211ENSMUST00000222711 6566 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Sh3rf1Q69ZI1 Pex5-201ENSMUST00000035861 3139 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
Sh3rf1Q69ZI1 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Sh3rf1Q69ZI1 Pbx3-201ENSMUST00000040638 2587 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Sh3rf1Q69ZI1 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
Sh3rf1Q69ZI1 Chmp2a-201ENSMUST00000005711 949 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Sh3rf1Q69ZI1 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Sh3rf1Q69ZI1 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Sh3rf1Q69ZI1 Gm10355-201ENSMUST00000097146 517 ntBASIC15.3■□□□□ 0.04
Sh3rf1Q69ZI1 Brpf1-209ENSMUST00000204198 4307 ntTSL 5 BASIC15.3■□□□□ 0.04
Sh3rf1Q69ZI1 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Sh3rf1Q69ZI1 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.04
Sh3rf1Q69ZI1 Hic1-201ENSMUST00000055619 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Sh3rf1Q69ZI1 Nyap1-204ENSMUST00000212152 2499 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Sh3rf1Q69ZI1 Gm15512-201ENSMUST00000137359 2257 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Sh3rf1Q69ZI1 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Sh3rf1Q69ZI1 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Sh3rf1Q69ZI1 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Sh3rf1Q69ZI1 Gm25990-201ENSMUST00000102440 86 ntBASIC15.29■□□□□ 0.04
Sh3rf1Q69ZI1 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC15.29■□□□□ 0.04
Sh3rf1Q69ZI1 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Sh3rf1Q69ZI1 Sardhos-201ENSMUST00000170435 265 ntTSL 3 BASIC15.29■□□□□ 0.04
Sh3rf1Q69ZI1 Gm3764-206ENSMUST00000181356 1088 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Sh3rf1Q69ZI1 Ndufaf8-202ENSMUST00000185558 427 ntTSL 5 BASIC15.29■□□□□ 0.04
Sh3rf1Q69ZI1 Tssc4-208ENSMUST00000208779 647 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Sh3rf1Q69ZI1 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC15.29■□□□□ 0.04
Sh3rf1Q69ZI1 Izumo1r-201ENSMUST00000034409 1291 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Sh3rf1Q69ZI1 Sf3b6-201ENSMUST00000046207 1180 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Sh3rf1Q69ZI1 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Sh3rf1Q69ZI1 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Sh3rf1Q69ZI1 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Sh3rf1Q69ZI1 Col2a1-201ENSMUST00000023123 5104 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Sh3rf1Q69ZI1 Zcchc3-201ENSMUST00000099207 3073 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Sh3rf1Q69ZI1 Sync-201ENSMUST00000102599 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Sh3rf1Q69ZI1 Slc22a15-207ENSMUST00000190824 3010 ntTSL 5 BASIC15.29■□□□□ 0.04
Sh3rf1Q69ZI1 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC15.29■□□□□ 0.04
Sh3rf1Q69ZI1 Pex3-202ENSMUST00000105539 1961 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Sh3rf1Q69ZI1 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Sh3rf1Q69ZI1 Rusc1-202ENSMUST00000090929 3706 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
Sh3rf1Q69ZI1 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Sh3rf1Q69ZI1 Emilin3-201ENSMUST00000057169 3547 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Sh3rf1Q69ZI1 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC15.29■□□□□ 0.04
Sh3rf1Q69ZI1 Dlgap1-207ENSMUST00000133983 7173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Sh3rf1Q69ZI1 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Sh3rf1Q69ZI1 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC15.28■□□□□ 0.04
Sh3rf1Q69ZI1 Acot10-201ENSMUST00000052910 1537 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
Sh3rf1Q69ZI1 Nfasc-208ENSMUST00000188307 3049 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Sh3rf1Q69ZI1 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC15.28■□□□□ 0.04
Sh3rf1Q69ZI1 Gm44291-201ENSMUST00000203102 2865 ntBASIC15.28■□□□□ 0.04
Sh3rf1Q69ZI1 Slc16a6-202ENSMUST00000070152 4219 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Sh3rf1Q69ZI1 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Sh3rf1Q69ZI1 Eif4g1-201ENSMUST00000044783 5444 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Sh3rf1Q69ZI1 Nfe2l1-201ENSMUST00000081775 4654 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Sh3rf1Q69ZI1 Camk1g-204ENSMUST00000169907 1968 ntTSL 5 BASIC15.28■□□□□ 0.04
Sh3rf1Q69ZI1 Gm43509-201ENSMUST00000196551 2594 ntBASIC15.28■□□□□ 0.04
Sh3rf1Q69ZI1 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Sh3rf1Q69ZI1 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC15.28■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 46.4 ms