Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Lmx1bO88609 Klrg1-201ENSMUST00000032207 1414 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Lmx1bO88609 Dio1-202ENSMUST00000106748 396 ntTSL 5 BASIC13.68□□□□□ -0.22
Lmx1bO88609 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Lmx1bO88609 Gm5177-201ENSMUST00000183092 997 ntBASIC13.68□□□□□ -0.22
Lmx1bO88609 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Lmx1bO88609 Tpd52l1-202ENSMUST00000213528 969 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Lmx1bO88609 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC13.68□□□□□ -0.22
Lmx1bO88609 Chchd1-203ENSMUST00000224633 557 ntBASIC13.68□□□□□ -0.22
Lmx1bO88609 Lce1b-201ENSMUST00000029531 647 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Lmx1bO88609 Abraxas1-202ENSMUST00000055245 2139 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Lmx1bO88609 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Lmx1bO88609 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Lmx1bO88609 Pld4-201ENSMUST00000063888 1982 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Lmx1bO88609 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Lmx1bO88609 Gm26666-201ENSMUST00000180763 2461 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Lmx1bO88609 Mllt11-201ENSMUST00000065482 1923 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Lmx1bO88609 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
Lmx1bO88609 Id4-201ENSMUST00000021810 3849 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Lmx1bO88609 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Lmx1bO88609 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC13.68□□□□□ -0.22
Lmx1bO88609 Adcy3-207ENSMUST00000152065 4728 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Lmx1bO88609 Gm29361-201ENSMUST00000183323 2000 ntBASIC13.68□□□□□ -0.22
Lmx1bO88609 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Lmx1bO88609 Disc1-205ENSMUST00000117658 2671 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Lmx1bO88609 Casc4-201ENSMUST00000078752 4215 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Lmx1bO88609 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Lmx1bO88609 Tchh-201ENSMUST00000064257 5823 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Lmx1bO88609 Lpgat1-201ENSMUST00000110855 7233 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Lmx1bO88609 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Lmx1bO88609 Gm13425-201ENSMUST00000145389 5391 ntTSL 3 BASIC13.67□□□□□ -0.22
Lmx1bO88609 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Lmx1bO88609 Gm12892-201ENSMUST00000117367 1146 ntBASIC13.67□□□□□ -0.22
Lmx1bO88609 Ms4a6d-202ENSMUST00000125291 679 ntTSL 3 BASIC13.67□□□□□ -0.22
Lmx1bO88609 Nudt6-208ENSMUST00000146324 1264 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Lmx1bO88609 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Lmx1bO88609 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC13.67□□□□□ -0.22
Lmx1bO88609 C1qa-201ENSMUST00000046285 1040 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Lmx1bO88609 Acaa2-201ENSMUST00000041053 1515 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Lmx1bO88609 Appbp2-201ENSMUST00000018625 6463 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Lmx1bO88609 Tex19.2-201ENSMUST00000039146 2046 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Lmx1bO88609 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Lmx1bO88609 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Lmx1bO88609 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC13.67□□□□□ -0.22
Lmx1bO88609 Ttc14-202ENSMUST00000108210 2684 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Lmx1bO88609 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Lmx1bO88609 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lmx1bO88609 Islr2-202ENSMUST00000163200 4123 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lmx1bO88609 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lmx1bO88609 Skor1-203ENSMUST00000119146 3610 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lmx1bO88609 Rb1cc1-201ENSMUST00000027040 7607 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lmx1bO88609 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Lmx1bO88609 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lmx1bO88609 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
Lmx1bO88609 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lmx1bO88609 Trim41-201ENSMUST00000047145 3432 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lmx1bO88609 Gm15939-201ENSMUST00000160756 2147 ntTSL 5 BASIC13.66□□□□□ -0.22
Lmx1bO88609 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Lmx1bO88609 Stard7-201ENSMUST00000110374 1530 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Lmx1bO88609 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC13.66□□□□□ -0.22
Lmx1bO88609 Zbtb11-201ENSMUST00000050248 4920 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Lmx1bO88609 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lmx1bO88609 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Lmx1bO88609 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC13.66□□□□□ -0.22
Lmx1bO88609 Rhox2h-201ENSMUST00000115162 779 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lmx1bO88609 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC13.66□□□□□ -0.22
Lmx1bO88609 Slc7a10-203ENSMUST00000135452 629 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Lmx1bO88609 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Lmx1bO88609 Gm10499-201ENSMUST00000174094 934 ntBASIC13.66□□□□□ -0.22
Lmx1bO88609 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Lmx1bO88609 Prdm5-203ENSMUST00000081219 984 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Lmx1bO88609 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lmx1bO88609 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lmx1bO88609 Nek1-202ENSMUST00000120689 5478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lmx1bO88609 Scube3-201ENSMUST00000043503 6699 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lmx1bO88609 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lmx1bO88609 Efcab14-204ENSMUST00000106525 2792 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lmx1bO88609 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Lmx1bO88609 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Lmx1bO88609 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Lmx1bO88609 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Lmx1bO88609 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Lmx1bO88609 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Lmx1bO88609 Kif1c-201ENSMUST00000072187 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Lmx1bO88609 Col2a1-201ENSMUST00000023123 5104 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Lmx1bO88609 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Lmx1bO88609 Nyx-201ENSMUST00000050434 5183 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Lmx1bO88609 Ogfrl1-201ENSMUST00000027343 4844 ntAPPRIS P1 TSL 3 BASIC13.65□□□□□ -0.22
Lmx1bO88609 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
Lmx1bO88609 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Lmx1bO88609 Commd5-202ENSMUST00000109793 920 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
Lmx1bO88609 Etfrf1-204ENSMUST00000111723 842 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
Lmx1bO88609 Gm11508-201ENSMUST00000129337 440 ntTSL 2 BASIC13.65□□□□□ -0.22
Lmx1bO88609 Haghl-211ENSMUST00000150324 1267 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Lmx1bO88609 Tmem33-206ENSMUST00000162543 664 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Lmx1bO88609 Cby3-202ENSMUST00000164067 731 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
Lmx1bO88609 Znrf1-213ENSMUST00000174333 515 ntTSL 3 BASIC13.65□□□□□ -0.22
Lmx1bO88609 Prss48-201ENSMUST00000061343 949 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Lmx1bO88609 Zfp358-203ENSMUST00000208423 2200 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
Lmx1bO88609 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 54.7 ms