Protein–RNA interactions for Protein: Q9Y2X8

UBE2D4, Ubiquitin-conjugating enzyme E2 D4, humanhuman

Predictions only

Length 147 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D4Q9Y2X8 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
UBE2D4Q9Y2X8 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
UBE2D4Q9Y2X8 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
UBE2D4Q9Y2X8 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
UBE2D4Q9Y2X8 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
UBE2D4Q9Y2X8 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
UBE2D4Q9Y2X8 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
UBE2D4Q9Y2X8 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
UBE2D4Q9Y2X8 KRT8P7-201ENST00000533003 1432 ntBASIC12.57□□□□□ -0.4
UBE2D4Q9Y2X8 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
UBE2D4Q9Y2X8 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC12.57□□□□□ -0.4
UBE2D4Q9Y2X8 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
UBE2D4Q9Y2X8 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
UBE2D4Q9Y2X8 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC12.57□□□□□ -0.4
UBE2D4Q9Y2X8 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
UBE2D4Q9Y2X8 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
UBE2D4Q9Y2X8 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
UBE2D4Q9Y2X8 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
UBE2D4Q9Y2X8 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC12.57□□□□□ -0.4
UBE2D4Q9Y2X8 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
UBE2D4Q9Y2X8 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
UBE2D4Q9Y2X8 CA15P1-201ENST00000481698 905 ntBASIC12.57□□□□□ -0.4
UBE2D4Q9Y2X8 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC12.57□□□□□ -0.4
UBE2D4Q9Y2X8 RNF121-214ENST00000533380 870 ntTSL 3 BASIC12.57□□□□□ -0.4
UBE2D4Q9Y2X8 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC12.57□□□□□ -0.4
UBE2D4Q9Y2X8 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
UBE2D4Q9Y2X8 RARRES2P10-201ENST00000564312 460 ntBASIC12.57□□□□□ -0.4
UBE2D4Q9Y2X8 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC12.57□□□□□ -0.4
UBE2D4Q9Y2X8 RPS15-203ENST00000586096 570 ntTSL 2 BASIC12.57□□□□□ -0.4
UBE2D4Q9Y2X8 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
UBE2D4Q9Y2X8 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
UBE2D4Q9Y2X8 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC12.57□□□□□ -0.4
UBE2D4Q9Y2X8 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC12.57□□□□□ -0.4
UBE2D4Q9Y2X8 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC12.57□□□□□ -0.4
UBE2D4Q9Y2X8 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
UBE2D4Q9Y2X8 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
UBE2D4Q9Y2X8 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
UBE2D4Q9Y2X8 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
UBE2D4Q9Y2X8 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
UBE2D4Q9Y2X8 AC133963.1-201ENST00000504166 1679 ntBASIC12.57□□□□□ -0.4
UBE2D4Q9Y2X8 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
UBE2D4Q9Y2X8 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
UBE2D4Q9Y2X8 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
UBE2D4Q9Y2X8 ASL-204ENST00000395331 1538 ntTSL 5 BASIC12.57□□□□□ -0.4
UBE2D4Q9Y2X8 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
UBE2D4Q9Y2X8 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC12.57□□□□□ -0.4
UBE2D4Q9Y2X8 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
UBE2D4Q9Y2X8 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC12.57□□□□□ -0.4
UBE2D4Q9Y2X8 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
UBE2D4Q9Y2X8 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
UBE2D4Q9Y2X8 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
UBE2D4Q9Y2X8 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC12.56□□□□□ -0.4
UBE2D4Q9Y2X8 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC12.56□□□□□ -0.4
UBE2D4Q9Y2X8 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
UBE2D4Q9Y2X8 BOC-212ENST00000485230 2173 ntTSL 2 BASIC12.56□□□□□ -0.4
UBE2D4Q9Y2X8 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
UBE2D4Q9Y2X8 NF2-208ENST00000403435 2568 ntTSL 5 BASIC12.56□□□□□ -0.4
UBE2D4Q9Y2X8 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC12.56□□□□□ -0.4
UBE2D4Q9Y2X8 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
UBE2D4Q9Y2X8 AL121761.2-201ENST00000598007 1648 ntBASIC12.56□□□□□ -0.4
UBE2D4Q9Y2X8 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC12.56□□□□□ -0.4
UBE2D4Q9Y2X8 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
UBE2D4Q9Y2X8 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
UBE2D4Q9Y2X8 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
UBE2D4Q9Y2X8 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC12.56□□□□□ -0.4
UBE2D4Q9Y2X8 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
UBE2D4Q9Y2X8 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC12.56□□□□□ -0.4
UBE2D4Q9Y2X8 MFAP1P1-201ENST00000442257 1255 ntBASIC12.56□□□□□ -0.4
UBE2D4Q9Y2X8 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC12.56□□□□□ -0.4
UBE2D4Q9Y2X8 AC009065.1-201ENST00000564055 1225 ntBASIC12.56□□□□□ -0.4
UBE2D4Q9Y2X8 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
UBE2D4Q9Y2X8 DGCR10-201ENST00000609839 495 ntBASIC12.56□□□□□ -0.4
UBE2D4Q9Y2X8 AC073648.6-201ENST00000641589 218 ntBASIC12.56□□□□□ -0.4
UBE2D4Q9Y2X8 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
UBE2D4Q9Y2X8 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
UBE2D4Q9Y2X8 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
UBE2D4Q9Y2X8 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
UBE2D4Q9Y2X8 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC12.56□□□□□ -0.4
UBE2D4Q9Y2X8 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
UBE2D4Q9Y2X8 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
UBE2D4Q9Y2X8 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC12.56□□□□□ -0.4
UBE2D4Q9Y2X8 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC12.56□□□□□ -0.4
UBE2D4Q9Y2X8 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC12.56□□□□□ -0.4
UBE2D4Q9Y2X8 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC12.56□□□□□ -0.4
UBE2D4Q9Y2X8 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC12.56□□□□□ -0.4
UBE2D4Q9Y2X8 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC12.56□□□□□ -0.4
UBE2D4Q9Y2X8 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC12.56□□□□□ -0.4
UBE2D4Q9Y2X8 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC12.56□□□□□ -0.4
UBE2D4Q9Y2X8 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
UBE2D4Q9Y2X8 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC12.55□□□□□ -0.4
UBE2D4Q9Y2X8 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
UBE2D4Q9Y2X8 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
UBE2D4Q9Y2X8 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
UBE2D4Q9Y2X8 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
UBE2D4Q9Y2X8 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
UBE2D4Q9Y2X8 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
UBE2D4Q9Y2X8 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
UBE2D4Q9Y2X8 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
UBE2D4Q9Y2X8 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
UBE2D4Q9Y2X8 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms