Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Gm27702-201ENSMUST00000184512 56 ntBASIC17.81■□□□□ 0.44
Trim56Q80VI1 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC17.81■□□□□ 0.44
Trim56Q80VI1 Cldn25-ps-201ENSMUST00000197641 693 ntBASIC17.81■□□□□ 0.44
Trim56Q80VI1 Gm43073-201ENSMUST00000198200 1189 ntBASIC17.81■□□□□ 0.44
Trim56Q80VI1 Smim4-204ENSMUST00000203261 1219 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Trim56Q80VI1 C1qa-201ENSMUST00000046285 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim56Q80VI1 Lce1f-201ENSMUST00000047153 728 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim56Q80VI1 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim56Q80VI1 Eda-209ENSMUST00000113783 4930 ntTSL 5 BASIC17.81■□□□□ 0.44
Trim56Q80VI1 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim56Q80VI1 Rprd1a-201ENSMUST00000046206 4297 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim56Q80VI1 Gm14780-201ENSMUST00000118387 2737 ntBASIC17.81■□□□□ 0.44
Trim56Q80VI1 Camsap3-201ENSMUST00000057028 4450 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim56Q80VI1 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Trim56Q80VI1 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim56Q80VI1 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim56Q80VI1 Pdzd11-201ENSMUST00000015812 1626 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim56Q80VI1 Oas1a-201ENSMUST00000080322 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim56Q80VI1 Nlrx1-203ENSMUST00000169651 3621 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim56Q80VI1 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC17.8■□□□□ 0.44
Trim56Q80VI1 Gm29340-201ENSMUST00000188763 3854 ntBASIC17.8■□□□□ 0.44
Trim56Q80VI1 Trmt6-201ENSMUST00000039554 2828 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim56Q80VI1 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC17.8■□□□□ 0.44
Trim56Q80VI1 Tmsb4x-202ENSMUST00000112175 864 ntTSL 2 BASIC17.8■□□□□ 0.44
Trim56Q80VI1 Cystm1-205ENSMUST00000152804 445 ntAPPRIS P2 TSL 3 BASIC17.8■□□□□ 0.44
Trim56Q80VI1 Gm30437-201ENSMUST00000206086 1201 ntBASIC17.8■□□□□ 0.44
Trim56Q80VI1 CT025555.1-201ENSMUST00000225901 1217 ntBASIC17.8■□□□□ 0.44
Trim56Q80VI1 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim56Q80VI1 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim56Q80VI1 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim56Q80VI1 Adgrb2-205ENSMUST00000106017 5104 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim56Q80VI1 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim56Q80VI1 Tmpo-201ENSMUST00000020123 3772 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim56Q80VI1 Impdh1-207ENSMUST00000162099 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim56Q80VI1 Cstf2-203ENSMUST00000113287 3661 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Trim56Q80VI1 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim56Q80VI1 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC17.79■□□□□ 0.44
Trim56Q80VI1 P4ha2-201ENSMUST00000019050 2230 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Trim56Q80VI1 Acot10-201ENSMUST00000052910 1537 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
Trim56Q80VI1 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim56Q80VI1 Qdpr-204ENSMUST00000120867 1234 ntTSL 5 BASIC17.79■□□□□ 0.44
Trim56Q80VI1 Fxyd5-208ENSMUST00000161805 1166 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim56Q80VI1 Gm24513-201ENSMUST00000174964 138 ntBASIC17.79■□□□□ 0.44
Trim56Q80VI1 1700030N18Rik-201ENSMUST00000202497 966 ntBASIC17.79■□□□□ 0.44
Trim56Q80VI1 Ndufaf2-202ENSMUST00000223734 556 ntBASIC17.79■□□□□ 0.44
Trim56Q80VI1 Hgfac-201ENSMUST00000030985 2135 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim56Q80VI1 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim56Q80VI1 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim56Q80VI1 Pacs1-201ENSMUST00000025786 4339 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim56Q80VI1 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim56Q80VI1 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim56Q80VI1 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Trim56Q80VI1 Adamts19-201ENSMUST00000052907 4666 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim56Q80VI1 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim56Q80VI1 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim56Q80VI1 Ifna12-201ENSMUST00000102806 797 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Trim56Q80VI1 Commd5-202ENSMUST00000109793 920 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Trim56Q80VI1 Gm11508-201ENSMUST00000129337 440 ntTSL 2 BASIC17.78■□□□□ 0.44
Trim56Q80VI1 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Trim56Q80VI1 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Trim56Q80VI1 Gm27397-201ENSMUST00000184997 107 ntBASIC17.78■□□□□ 0.44
Trim56Q80VI1 Gm2213-201ENSMUST00000197485 688 ntBASIC17.78■□□□□ 0.44
Trim56Q80VI1 Gm45231-201ENSMUST00000208629 1064 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Trim56Q80VI1 AC155252.2-201ENSMUST00000226946 680 ntBASIC17.78■□□□□ 0.44
Trim56Q80VI1 Olfr520-201ENSMUST00000098264 951 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Trim56Q80VI1 Zbtb14-201ENSMUST00000062369 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim56Q80VI1 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim56Q80VI1 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Trim56Q80VI1 Gm13410-201ENSMUST00000117058 1415 ntBASIC17.78■□□□□ 0.44
Trim56Q80VI1 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim56Q80VI1 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim56Q80VI1 Gm10814-201ENSMUST00000180505 1933 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Trim56Q80VI1 Stard7-202ENSMUST00000110375 3116 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim56Q80VI1 Gm16976-201ENSMUST00000099718 1894 ntTSL 5 BASIC17.78■□□□□ 0.44
Trim56Q80VI1 Rgs14-201ENSMUST00000063771 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim56Q80VI1 Cyp2a5-201ENSMUST00000005685 2013 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim56Q80VI1 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim56Q80VI1 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Trim56Q80VI1 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
Trim56Q80VI1 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
Trim56Q80VI1 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
Trim56Q80VI1 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
Trim56Q80VI1 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim56Q80VI1 Gm23935-201ENSMUST00000102303 57 ntBASIC17.77■□□□□ 0.44
Trim56Q80VI1 Gm24270-201ENSMUST00000102326 57 ntBASIC17.77■□□□□ 0.44
Trim56Q80VI1 Asphd1-202ENSMUST00000106339 518 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim56Q80VI1 Evx1-202ENSMUST00000129243 1034 ntTSL 3 BASIC17.77■□□□□ 0.44
Trim56Q80VI1 Pcp2-203ENSMUST00000133459 470 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim56Q80VI1 Gm24245-201ENSMUST00000157318 57 ntBASIC17.77■□□□□ 0.44
Trim56Q80VI1 Ndufaf8-202ENSMUST00000185558 427 ntTSL 5 BASIC17.77■□□□□ 0.44
Trim56Q80VI1 Gm29202-201ENSMUST00000191263 422 ntTSL 5 BASIC17.77■□□□□ 0.44
Trim56Q80VI1 Gm43575-201ENSMUST00000196420 516 ntBASIC17.77■□□□□ 0.44
Trim56Q80VI1 Fam71e1-204ENSMUST00000205422 366 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Trim56Q80VI1 Pcp2-201ENSMUST00000004749 495 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Trim56Q80VI1 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim56Q80VI1 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim56Q80VI1 Tmem40-202ENSMUST00000112946 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim56Q80VI1 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
Trim56Q80VI1 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Trim56Q80VI1 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 45.7 ms