Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC25.2■■□□□ 1.62
NPHP4O75161 AC007064.4-201ENST00000637740 555 ntBASIC25.2■■□□□ 1.62
NPHP4O75161 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC25.2■■□□□ 1.62
NPHP4O75161 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
NPHP4O75161 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC25.2■■□□□ 1.62
NPHP4O75161 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC25.19■■□□□ 1.62
NPHP4O75161 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC25.19■■□□□ 1.62
NPHP4O75161 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC25.19■■□□□ 1.62
NPHP4O75161 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC25.19■■□□□ 1.62
NPHP4O75161 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC25.19■■□□□ 1.62
NPHP4O75161 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC25.19■■□□□ 1.62
NPHP4O75161 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC25.19■■□□□ 1.62
NPHP4O75161 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC25.19■■□□□ 1.62
NPHP4O75161 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC25.19■■□□□ 1.62
NPHP4O75161 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC25.19■■□□□ 1.62
NPHP4O75161 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
NPHP4O75161 SIGLEC30P-201ENST00000455569 941 ntBASIC25.19■■□□□ 1.62
NPHP4O75161 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC25.19■■□□□ 1.62
NPHP4O75161 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC25.19■■□□□ 1.62
NPHP4O75161 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC25.19■■□□□ 1.62
NPHP4O75161 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC25.19■■□□□ 1.62
NPHP4O75161 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC25.19■■□□□ 1.62
NPHP4O75161 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC25.19■■□□□ 1.62
NPHP4O75161 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC25.19■■□□□ 1.62
NPHP4O75161 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC25.19■■□□□ 1.62
NPHP4O75161 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
NPHP4O75161 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC25.18■■□□□ 1.62
NPHP4O75161 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC25.18■■□□□ 1.62
NPHP4O75161 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
NPHP4O75161 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC25.18■■□□□ 1.62
NPHP4O75161 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC25.18■■□□□ 1.62
NPHP4O75161 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
NPHP4O75161 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
NPHP4O75161 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC25.18■■□□□ 1.62
NPHP4O75161 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
NPHP4O75161 KLF4P1-201ENST00000412782 1185 ntBASIC25.18■■□□□ 1.62
NPHP4O75161 AL627223.1-201ENST00000416693 442 ntBASIC25.18■■□□□ 1.62
NPHP4O75161 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC25.18■■□□□ 1.62
NPHP4O75161 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC25.18■■□□□ 1.62
NPHP4O75161 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC25.18■■□□□ 1.62
NPHP4O75161 DUX4L17-201ENST00000557360 1267 ntBASIC25.18■■□□□ 1.62
NPHP4O75161 RN7SL204P-201ENST00000582831 262 ntBASIC25.18■■□□□ 1.62
NPHP4O75161 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC25.18■■□□□ 1.62
NPHP4O75161 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
NPHP4O75161 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
NPHP4O75161 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC25.17■■□□□ 1.62
NPHP4O75161 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC25.17■■□□□ 1.62
NPHP4O75161 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
NPHP4O75161 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC25.17■■□□□ 1.62
NPHP4O75161 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC25.17■■□□□ 1.62
NPHP4O75161 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC25.17■■□□□ 1.62
NPHP4O75161 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
NPHP4O75161 INGX-202ENST00000489074 768 ntBASIC25.17■■□□□ 1.62
NPHP4O75161 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC25.17■■□□□ 1.62
NPHP4O75161 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
NPHP4O75161 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
NPHP4O75161 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC25.17■■□□□ 1.62
NPHP4O75161 EFS-203ENST00000429593 2610 ntTSL 2 BASIC25.17■■□□□ 1.62
NPHP4O75161 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
NPHP4O75161 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC25.17■■□□□ 1.62
NPHP4O75161 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
NPHP4O75161 REM2-202ENST00000536884 1331 ntTSL 2 BASIC25.17■■□□□ 1.62
NPHP4O75161 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
NPHP4O75161 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
NPHP4O75161 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC25.16■■□□□ 1.62
NPHP4O75161 PON3-205ENST00000451904 1053 ntTSL 3 BASIC25.16■■□□□ 1.62
NPHP4O75161 OARD1-208ENST00000469104 704 ntTSL 2 BASIC25.16■■□□□ 1.62
NPHP4O75161 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC25.16■■□□□ 1.62
NPHP4O75161 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC25.16■■□□□ 1.62
NPHP4O75161 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC25.16■■□□□ 1.62
NPHP4O75161 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC25.16■■□□□ 1.62
NPHP4O75161 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC25.16■■□□□ 1.62
NPHP4O75161 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
NPHP4O75161 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC25.16■■□□□ 1.62
NPHP4O75161 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC25.16■■□□□ 1.62
NPHP4O75161 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC25.16■■□□□ 1.62
NPHP4O75161 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC25.16■■□□□ 1.62
NPHP4O75161 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC25.16■■□□□ 1.62
NPHP4O75161 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC25.15■■□□□ 1.62
NPHP4O75161 AP002414.1-201ENST00000391405 1147 ntBASIC25.15■■□□□ 1.62
NPHP4O75161 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC25.15■■□□□ 1.62
NPHP4O75161 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC25.15■■□□□ 1.62
NPHP4O75161 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC25.15■■□□□ 1.62
NPHP4O75161 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
NPHP4O75161 AL353135.1-201ENST00000606729 504 ntBASIC25.15■■□□□ 1.62
NPHP4O75161 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC25.15■■□□□ 1.62
NPHP4O75161 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC25.15■■□□□ 1.62
NPHP4O75161 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC25.15■■□□□ 1.62
NPHP4O75161 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC25.15■■□□□ 1.62
NPHP4O75161 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC25.15■■□□□ 1.62
NPHP4O75161 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
NPHP4O75161 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
NPHP4O75161 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC25.15■■□□□ 1.62
NPHP4O75161 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
NPHP4O75161 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
NPHP4O75161 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC25.15■■□□□ 1.62
NPHP4O75161 LINC01006-201ENST00000333319 2292 ntBASIC25.15■■□□□ 1.62
NPHP4O75161 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
NPHP4O75161 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
NPHP4O75161 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC25.15■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms