Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC20.88■□□□□ 0.93
CTCFP49711 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC20.88■□□□□ 0.93
CTCFP49711 NMU-203ENST00000507338 658 ntTSL 3 BASIC20.88■□□□□ 0.93
CTCFP49711 CR383656.12-201ENST00000549567 513 ntBASIC20.88■□□□□ 0.93
CTCFP49711 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC20.88■□□□□ 0.93
CTCFP49711 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CTCFP49711 AL513210.1-201ENST00000629608 234 ntBASIC20.88■□□□□ 0.93
CTCFP49711 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
CTCFP49711 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC20.88■□□□□ 0.93
CTCFP49711 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CTCFP49711 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CTCFP49711 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CTCFP49711 AC125634.1-201ENST00000438758 1403 ntBASIC20.87■□□□□ 0.93
CTCFP49711 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC20.87■□□□□ 0.93
CTCFP49711 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CTCFP49711 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CTCFP49711 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
CTCFP49711 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC20.87■□□□□ 0.93
CTCFP49711 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
CTCFP49711 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC20.87■□□□□ 0.93
CTCFP49711 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CTCFP49711 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC20.87■□□□□ 0.93
CTCFP49711 AP002414.1-201ENST00000391405 1147 ntBASIC20.87■□□□□ 0.93
CTCFP49711 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC20.87■□□□□ 0.93
CTCFP49711 VN2R19P-201ENST00000442399 1052 ntBASIC20.87■□□□□ 0.93
CTCFP49711 TSPY16P-201ENST00000449843 468 ntBASIC20.87■□□□□ 0.93
CTCFP49711 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC20.87■□□□□ 0.93
CTCFP49711 SDCCAG3P1-201ENST00000589292 1150 ntBASIC20.87■□□□□ 0.93
CTCFP49711 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
CTCFP49711 AC009237.14-201ENST00000609975 1594 ntBASIC20.87■□□□□ 0.93
CTCFP49711 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CTCFP49711 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CTCFP49711 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CTCFP49711 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC20.87■□□□□ 0.93
CTCFP49711 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CTCFP49711 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
CTCFP49711 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC20.87■□□□□ 0.93
CTCFP49711 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CTCFP49711 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CTCFP49711 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC20.86■□□□□ 0.93
CTCFP49711 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
CTCFP49711 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CTCFP49711 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
CTCFP49711 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CTCFP49711 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CTCFP49711 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CTCFP49711 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CTCFP49711 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CTCFP49711 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CTCFP49711 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC20.86■□□□□ 0.93
CTCFP49711 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CTCFP49711 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC20.86■□□□□ 0.93
CTCFP49711 AC067863.1-201ENST00000494933 530 ntBASIC20.86■□□□□ 0.93
CTCFP49711 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC20.86■□□□□ 0.93
CTCFP49711 PDPK2P-202ENST00000562415 1191 ntBASIC20.86■□□□□ 0.93
CTCFP49711 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
CTCFP49711 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CTCFP49711 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC20.86■□□□□ 0.93
CTCFP49711 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC20.86■□□□□ 0.93
CTCFP49711 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CTCFP49711 MIR6799-201ENST00000620297 69 ntBASIC20.86■□□□□ 0.93
CTCFP49711 LINC00628-201ENST00000628516 1289 ntBASIC20.86■□□□□ 0.93
CTCFP49711 AL022326.1-202ENST00000641533 845 ntBASIC20.86■□□□□ 0.93
CTCFP49711 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CTCFP49711 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CTCFP49711 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CTCFP49711 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CTCFP49711 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CTCFP49711 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CTCFP49711 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CTCFP49711 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC20.86■□□□□ 0.93
CTCFP49711 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
CTCFP49711 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
CTCFP49711 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC20.86■□□□□ 0.93
CTCFP49711 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC20.85■□□□□ 0.93
CTCFP49711 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CTCFP49711 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CTCFP49711 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC20.85■□□□□ 0.93
CTCFP49711 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
CTCFP49711 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.85■□□□□ 0.93
CTCFP49711 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CTCFP49711 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC20.85■□□□□ 0.93
CTCFP49711 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CTCFP49711 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
CTCFP49711 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CTCFP49711 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CTCFP49711 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC20.85■□□□□ 0.93
CTCFP49711 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC20.85■□□□□ 0.93
CTCFP49711 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC20.85■□□□□ 0.93
CTCFP49711 HCG4B-203ENST00000450128 991 ntBASIC20.85■□□□□ 0.93
CTCFP49711 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
CTCFP49711 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
CTCFP49711 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC20.85■□□□□ 0.93
CTCFP49711 COX11-202ENST00000571584 1108 ntTSL 2 BASIC20.85■□□□□ 0.93
CTCFP49711 MIR4751-201ENST00000578027 74 ntBASIC20.85■□□□□ 0.93
CTCFP49711 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC20.85■□□□□ 0.93
CTCFP49711 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
CTCFP49711 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CTCFP49711 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC20.85■□□□□ 0.93
CTCFP49711 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms