Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
BRCA1P38398 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
BRCA1P38398 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
BRCA1P38398 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
BRCA1P38398 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
BRCA1P38398 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC21.86■■□□□ 1.09
BRCA1P38398 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
BRCA1P38398 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
BRCA1P38398 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC21.86■■□□□ 1.09
BRCA1P38398 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC21.86■■□□□ 1.09
BRCA1P38398 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
BRCA1P38398 AC005225.4-201ENST00000557330 545 ntBASIC21.86■■□□□ 1.09
BRCA1P38398 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC21.86■■□□□ 1.09
BRCA1P38398 BSG-215ENST00000618006 1329 ntTSL 2 BASIC21.86■■□□□ 1.09
BRCA1P38398 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
BRCA1P38398 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
BRCA1P38398 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
BRCA1P38398 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
BRCA1P38398 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC21.86■■□□□ 1.09
BRCA1P38398 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
BRCA1P38398 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC21.86■■□□□ 1.09
BRCA1P38398 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC21.86■■□□□ 1.09
BRCA1P38398 AL499627.1-201ENST00000569373 2188 ntBASIC21.86■■□□□ 1.09
BRCA1P38398 AC015922.1-201ENST00000421102 1152 ntBASIC21.86■■□□□ 1.09
BRCA1P38398 AC005034.1-201ENST00000426657 489 ntBASIC21.86■■□□□ 1.09
BRCA1P38398 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC21.86■■□□□ 1.09
BRCA1P38398 SMN2-210ENST00000511812 867 ntTSL 2 BASIC21.86■■□□□ 1.09
BRCA1P38398 AC004449.1-201ENST00000564240 433 ntBASIC21.86■■□□□ 1.09
BRCA1P38398 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC21.86■■□□□ 1.09
BRCA1P38398 YTHDF3-AS1-201ENST00000603538 718 ntBASIC21.86■■□□□ 1.09
BRCA1P38398 AL353135.1-201ENST00000606729 504 ntBASIC21.86■■□□□ 1.09
BRCA1P38398 AQP6-205ENST00000618286 829 ntTSL 5 BASIC21.86■■□□□ 1.09
BRCA1P38398 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC21.86■■□□□ 1.09
BRCA1P38398 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
BRCA1P38398 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC21.85■■□□□ 1.09
BRCA1P38398 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
BRCA1P38398 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
BRCA1P38398 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
BRCA1P38398 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
BRCA1P38398 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
BRCA1P38398 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
BRCA1P38398 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC21.85■■□□□ 1.09
BRCA1P38398 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
BRCA1P38398 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
BRCA1P38398 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
BRCA1P38398 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC21.85■■□□□ 1.09
BRCA1P38398 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
BRCA1P38398 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
BRCA1P38398 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
BRCA1P38398 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC21.85■■□□□ 1.09
BRCA1P38398 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC21.85■■□□□ 1.09
BRCA1P38398 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC21.85■■□□□ 1.09
BRCA1P38398 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC21.85■■□□□ 1.09
BRCA1P38398 IGHV3OR16-6-201ENST00000568775 360 ntBASIC21.85■■□□□ 1.09
BRCA1P38398 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
BRCA1P38398 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
BRCA1P38398 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC21.84■■□□□ 1.09
BRCA1P38398 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC21.84■■□□□ 1.09
BRCA1P38398 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
BRCA1P38398 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
BRCA1P38398 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
BRCA1P38398 BCAR1-209ENST00000546196 1340 ntBASIC21.84■■□□□ 1.09
BRCA1P38398 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
BRCA1P38398 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
BRCA1P38398 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC21.84■■□□□ 1.09
BRCA1P38398 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
BRCA1P38398 AL020989.1-201ENST00000422979 469 ntBASIC21.84■■□□□ 1.09
BRCA1P38398 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC21.84■■□□□ 1.09
BRCA1P38398 FAM86GP-201ENST00000448322 971 ntBASIC21.84■■□□□ 1.09
BRCA1P38398 TAF8-206ENST00000472818 719 ntTSL 2 BASIC21.84■■□□□ 1.09
BRCA1P38398 NMU-203ENST00000507338 658 ntTSL 3 BASIC21.84■■□□□ 1.09
BRCA1P38398 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC21.84■■□□□ 1.09
BRCA1P38398 OR7E47P-204ENST00000575924 449 ntBASIC21.84■■□□□ 1.09
BRCA1P38398 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
BRCA1P38398 AC105339.1-204ENST00000636249 355 ntBASIC21.84■■□□□ 1.09
BRCA1P38398 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
BRCA1P38398 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
BRCA1P38398 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC21.84■■□□□ 1.09
BRCA1P38398 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC21.84■■□□□ 1.09
BRCA1P38398 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
BRCA1P38398 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC21.84■■□□□ 1.09
BRCA1P38398 GID4-202ENST00000376345 1391 ntTSL 3 BASIC21.84■■□□□ 1.09
BRCA1P38398 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
BRCA1P38398 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
BRCA1P38398 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC21.83■■□□□ 1.09
BRCA1P38398 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
BRCA1P38398 AL627223.1-201ENST00000416693 442 ntBASIC21.83■■□□□ 1.09
BRCA1P38398 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
BRCA1P38398 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
BRCA1P38398 MIR4745-201ENST00000577608 62 ntBASIC21.83■■□□□ 1.09
BRCA1P38398 TK1-204ENST00000590430 683 ntTSL 3 BASIC21.83■■□□□ 1.09
BRCA1P38398 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
BRCA1P38398 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
BRCA1P38398 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.09
BRCA1P38398 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC21.83■■□□□ 1.09
BRCA1P38398 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
BRCA1P38398 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
BRCA1P38398 SNCG-201ENST00000348795 684 ntTSL 2 BASIC21.83■■□□□ 1.08
BRCA1P38398 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC21.83■■□□□ 1.08
BRCA1P38398 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms