Protein–RNA interactions for Protein: Q8R1T1

Chmp7, Charged multivesicular body protein 7, mousemouse

Predictions only

Length 451 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp7Q8R1T1 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC29.21■■■□□ 2.27
Chmp7Q8R1T1 Gm15546-201ENSMUST00000122095 826 ntBASIC29.21■■■□□ 2.27
Chmp7Q8R1T1 Gm43592-201ENSMUST00000196922 1165 ntBASIC29.21■■■□□ 2.27
Chmp7Q8R1T1 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
Chmp7Q8R1T1 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC29.2■■■□□ 2.27
Chmp7Q8R1T1 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
Chmp7Q8R1T1 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC29.19■■■□□ 2.26
Chmp7Q8R1T1 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC29.19■■■□□ 2.26
Chmp7Q8R1T1 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC29.19■■■□□ 2.26
Chmp7Q8R1T1 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
Chmp7Q8R1T1 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC29.18■■■□□ 2.26
Chmp7Q8R1T1 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
Chmp7Q8R1T1 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC29.17■■■□□ 2.26
Chmp7Q8R1T1 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
Chmp7Q8R1T1 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC29.16■■■□□ 2.26
Chmp7Q8R1T1 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC29.16■■■□□ 2.26
Chmp7Q8R1T1 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC29.16■■■□□ 2.26
Chmp7Q8R1T1 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC29.15■■■□□ 2.26
Chmp7Q8R1T1 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
Chmp7Q8R1T1 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
Chmp7Q8R1T1 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
Chmp7Q8R1T1 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC29.15■■■□□ 2.26
Chmp7Q8R1T1 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC29.15■■■□□ 2.26
Chmp7Q8R1T1 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC29.14■■■□□ 2.26
Chmp7Q8R1T1 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC29.13■■■□□ 2.25
Chmp7Q8R1T1 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC29.13■■■□□ 2.25
Chmp7Q8R1T1 Gm5522-201ENSMUST00000189483 1242 ntBASIC29.13■■■□□ 2.25
Chmp7Q8R1T1 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC29.12■■■□□ 2.25
Chmp7Q8R1T1 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
Chmp7Q8R1T1 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
Chmp7Q8R1T1 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.25
Chmp7Q8R1T1 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC29.11■■■□□ 2.25
Chmp7Q8R1T1 Nsd1-203ENSMUST00000224156 1149 ntBASIC29.11■■■□□ 2.25
Chmp7Q8R1T1 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.25
Chmp7Q8R1T1 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC29.11■■■□□ 2.25
Chmp7Q8R1T1 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC29.09■■■□□ 2.25
Chmp7Q8R1T1 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC29.09■■■□□ 2.25
Chmp7Q8R1T1 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
Chmp7Q8R1T1 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC29.08■■■□□ 2.25
Chmp7Q8R1T1 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC29.08■■■□□ 2.25
Chmp7Q8R1T1 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC29.08■■■□□ 2.25
Chmp7Q8R1T1 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC29.08■■■□□ 2.24
Chmp7Q8R1T1 Gm22567-201ENSMUST00000175542 342 ntBASIC29.07■■■□□ 2.24
Chmp7Q8R1T1 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC29.07■■■□□ 2.24
Chmp7Q8R1T1 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC29.07■■■□□ 2.24
Chmp7Q8R1T1 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC29.06■■■□□ 2.24
Chmp7Q8R1T1 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC29.06■■■□□ 2.24
Chmp7Q8R1T1 Gm13238-201ENSMUST00000117655 780 ntBASIC29.05■■■□□ 2.24
Chmp7Q8R1T1 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
Chmp7Q8R1T1 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
Chmp7Q8R1T1 Gm43566-201ENSMUST00000196851 808 ntBASIC29.05■■■□□ 2.24
Chmp7Q8R1T1 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC29.05■■■□□ 2.24
Chmp7Q8R1T1 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC29.05■■■□□ 2.24
Chmp7Q8R1T1 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC29.04■■■□□ 2.24
Chmp7Q8R1T1 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.24
Chmp7Q8R1T1 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC29.04■■■□□ 2.24
Chmp7Q8R1T1 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC29.04■■■□□ 2.24
Chmp7Q8R1T1 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC29.03■■■□□ 2.24
Chmp7Q8R1T1 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
Chmp7Q8R1T1 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC29.03■■■□□ 2.24
Chmp7Q8R1T1 Gm45444-201ENSMUST00000211394 898 ntBASIC29.03■■■□□ 2.24
Chmp7Q8R1T1 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
Chmp7Q8R1T1 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
Chmp7Q8R1T1 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC29.02■■■□□ 2.24
Chmp7Q8R1T1 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC29.02■■■□□ 2.24
Chmp7Q8R1T1 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC29.02■■■□□ 2.24
Chmp7Q8R1T1 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
Chmp7Q8R1T1 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
Chmp7Q8R1T1 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
Chmp7Q8R1T1 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC29.02■■■□□ 2.24
Chmp7Q8R1T1 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC29.02■■■□□ 2.24
Chmp7Q8R1T1 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.23
Chmp7Q8R1T1 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC29.01■■■□□ 2.23
Chmp7Q8R1T1 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC29■■■□□ 2.23
Chmp7Q8R1T1 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
Chmp7Q8R1T1 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC29■■■□□ 2.23
Chmp7Q8R1T1 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC29■■■□□ 2.23
Chmp7Q8R1T1 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC29■■■□□ 2.23
Chmp7Q8R1T1 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
Chmp7Q8R1T1 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
Chmp7Q8R1T1 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC28.98■■■□□ 2.23
Chmp7Q8R1T1 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC28.98■■■□□ 2.23
Chmp7Q8R1T1 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC28.98■■■□□ 2.23
Chmp7Q8R1T1 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC28.97■■■□□ 2.23
Chmp7Q8R1T1 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
Chmp7Q8R1T1 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
Chmp7Q8R1T1 AC122428.3-201ENSMUST00000215551 2290 ntBASIC28.97■■■□□ 2.23
Chmp7Q8R1T1 Gm15820-201ENSMUST00000201566 728 ntBASIC28.96■■■□□ 2.23
Chmp7Q8R1T1 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC28.96■■■□□ 2.23
Chmp7Q8R1T1 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC28.96■■■□□ 2.23
Chmp7Q8R1T1 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC28.96■■■□□ 2.23
Chmp7Q8R1T1 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC28.95■■■□□ 2.22
Chmp7Q8R1T1 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC28.95■■■□□ 2.22
Chmp7Q8R1T1 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC28.94■■■□□ 2.22
Chmp7Q8R1T1 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC28.94■■■□□ 2.22
Chmp7Q8R1T1 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC28.94■■■□□ 2.22
Chmp7Q8R1T1 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC28.94■■■□□ 2.22
Chmp7Q8R1T1 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC28.94■■■□□ 2.22
Chmp7Q8R1T1 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC28.93■■■□□ 2.22
Chmp7Q8R1T1 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC28.92■■■□□ 2.22
Retrieved 100 of 76,532 protein–RNA pairs in 47.8 ms