Protein–RNA interactions for Protein: Q6PE01

Snrnp40, U5 small nuclear ribonucleoprotein 40 kDa protein, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Snrnp40Q6PE01 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
Snrnp40Q6PE01 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC20.18■□□□□ 0.82
Snrnp40Q6PE01 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Snrnp40Q6PE01 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Snrnp40Q6PE01 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Snrnp40Q6PE01 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Snrnp40Q6PE01 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
Snrnp40Q6PE01 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
Snrnp40Q6PE01 Gm42501-201ENSMUST00000200220 1026 ntBASIC20.16■□□□□ 0.82
Snrnp40Q6PE01 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Snrnp40Q6PE01 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Snrnp40Q6PE01 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Snrnp40Q6PE01 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Snrnp40Q6PE01 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Snrnp40Q6PE01 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC20.15■□□□□ 0.82
Snrnp40Q6PE01 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Snrnp40Q6PE01 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Snrnp40Q6PE01 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Snrnp40Q6PE01 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Snrnp40Q6PE01 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Snrnp40Q6PE01 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC20.14■□□□□ 0.81
Snrnp40Q6PE01 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Snrnp40Q6PE01 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Snrnp40Q6PE01 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Snrnp40Q6PE01 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC20.14■□□□□ 0.81
Snrnp40Q6PE01 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC20.13■□□□□ 0.81
Snrnp40Q6PE01 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Snrnp40Q6PE01 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Snrnp40Q6PE01 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
Snrnp40Q6PE01 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Snrnp40Q6PE01 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Snrnp40Q6PE01 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Snrnp40Q6PE01 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC20.12■□□□□ 0.81
Snrnp40Q6PE01 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Snrnp40Q6PE01 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Snrnp40Q6PE01 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
Snrnp40Q6PE01 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC20.11■□□□□ 0.81
Snrnp40Q6PE01 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Snrnp40Q6PE01 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
Snrnp40Q6PE01 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC20.11■□□□□ 0.81
Snrnp40Q6PE01 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Snrnp40Q6PE01 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Snrnp40Q6PE01 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Snrnp40Q6PE01 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC20.1■□□□□ 0.81
Snrnp40Q6PE01 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Snrnp40Q6PE01 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
Snrnp40Q6PE01 Gm9959-201ENSMUST00000068277 390 ntBASIC20.1■□□□□ 0.81
Snrnp40Q6PE01 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Snrnp40Q6PE01 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
Snrnp40Q6PE01 Gm6206-201ENSMUST00000133472 2199 ntBASIC20.1■□□□□ 0.81
Snrnp40Q6PE01 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Snrnp40Q6PE01 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC20.09■□□□□ 0.81
Snrnp40Q6PE01 Gm18755-201ENSMUST00000218030 1099 ntBASIC20.09■□□□□ 0.81
Snrnp40Q6PE01 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Snrnp40Q6PE01 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Snrnp40Q6PE01 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Snrnp40Q6PE01 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Snrnp40Q6PE01 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Snrnp40Q6PE01 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
Snrnp40Q6PE01 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Snrnp40Q6PE01 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Snrnp40Q6PE01 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Snrnp40Q6PE01 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Snrnp40Q6PE01 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
Snrnp40Q6PE01 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Snrnp40Q6PE01 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Snrnp40Q6PE01 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC20.05■□□□□ 0.8
Snrnp40Q6PE01 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC20.05■□□□□ 0.8
Snrnp40Q6PE01 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC20.04■□□□□ 0.8
Snrnp40Q6PE01 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Snrnp40Q6PE01 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Snrnp40Q6PE01 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Snrnp40Q6PE01 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Snrnp40Q6PE01 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Snrnp40Q6PE01 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC20.03■□□□□ 0.8
Snrnp40Q6PE01 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Snrnp40Q6PE01 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Snrnp40Q6PE01 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC20.02■□□□□ 0.8
Snrnp40Q6PE01 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Snrnp40Q6PE01 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Snrnp40Q6PE01 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC20.02■□□□□ 0.8
Snrnp40Q6PE01 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
Snrnp40Q6PE01 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Snrnp40Q6PE01 Amer2-203ENSMUST00000225247 2662 ntBASIC20.02■□□□□ 0.8
Snrnp40Q6PE01 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Snrnp40Q6PE01 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Snrnp40Q6PE01 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
Snrnp40Q6PE01 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Snrnp40Q6PE01 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC20■□□□□ 0.79
Snrnp40Q6PE01 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Snrnp40Q6PE01 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Snrnp40Q6PE01 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Snrnp40Q6PE01 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Snrnp40Q6PE01 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Snrnp40Q6PE01 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
Snrnp40Q6PE01 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC19.99■□□□□ 0.79
Snrnp40Q6PE01 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC19.99■□□□□ 0.79
Snrnp40Q6PE01 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC19.98■□□□□ 0.79
Snrnp40Q6PE01 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
Snrnp40Q6PE01 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC19.96■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 26.6 ms