Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC24.01■■□□□ 1.43
Upf3aQ3ULJ3 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC24.01■■□□□ 1.43
Upf3aQ3ULJ3 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC24■■□□□ 1.43
Upf3aQ3ULJ3 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC24■■□□□ 1.43
Upf3aQ3ULJ3 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC23.99■■□□□ 1.43
Upf3aQ3ULJ3 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC23.99■■□□□ 1.43
Upf3aQ3ULJ3 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC23.99■■□□□ 1.43
Upf3aQ3ULJ3 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC23.99■■□□□ 1.43
Upf3aQ3ULJ3 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
Upf3aQ3ULJ3 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
Upf3aQ3ULJ3 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Upf3aQ3ULJ3 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC23.98■■□□□ 1.43
Upf3aQ3ULJ3 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Upf3aQ3ULJ3 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
Upf3aQ3ULJ3 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Upf3aQ3ULJ3 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Upf3aQ3ULJ3 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
Upf3aQ3ULJ3 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC23.97■■□□□ 1.43
Upf3aQ3ULJ3 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC23.97■■□□□ 1.43
Upf3aQ3ULJ3 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC23.97■■□□□ 1.43
Upf3aQ3ULJ3 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
Upf3aQ3ULJ3 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Upf3aQ3ULJ3 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Upf3aQ3ULJ3 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Upf3aQ3ULJ3 Gm45444-201ENSMUST00000211394 898 ntBASIC23.96■■□□□ 1.43
Upf3aQ3ULJ3 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.43
Upf3aQ3ULJ3 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC23.95■■□□□ 1.42
Upf3aQ3ULJ3 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Upf3aQ3ULJ3 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC23.94■■□□□ 1.42
Upf3aQ3ULJ3 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC23.94■■□□□ 1.42
Upf3aQ3ULJ3 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC23.94■■□□□ 1.42
Upf3aQ3ULJ3 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
Upf3aQ3ULJ3 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Upf3aQ3ULJ3 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
Upf3aQ3ULJ3 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
Upf3aQ3ULJ3 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC23.91■■□□□ 1.42
Upf3aQ3ULJ3 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC23.91■■□□□ 1.42
Upf3aQ3ULJ3 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
Upf3aQ3ULJ3 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
Upf3aQ3ULJ3 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Upf3aQ3ULJ3 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
Upf3aQ3ULJ3 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
Upf3aQ3ULJ3 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC23.9■■□□□ 1.42
Upf3aQ3ULJ3 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC23.9■■□□□ 1.42
Upf3aQ3ULJ3 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.41
Upf3aQ3ULJ3 AC093043.1-201ENSMUST00000226700 898 ntBASIC23.89■■□□□ 1.41
Upf3aQ3ULJ3 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
Upf3aQ3ULJ3 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
Upf3aQ3ULJ3 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
Upf3aQ3ULJ3 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Upf3aQ3ULJ3 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC23.88■■□□□ 1.41
Upf3aQ3ULJ3 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC23.88■■□□□ 1.41
Upf3aQ3ULJ3 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Upf3aQ3ULJ3 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC23.88■■□□□ 1.41
Upf3aQ3ULJ3 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC23.87■■□□□ 1.41
Upf3aQ3ULJ3 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC23.87■■□□□ 1.41
Upf3aQ3ULJ3 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Upf3aQ3ULJ3 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC23.87■■□□□ 1.41
Upf3aQ3ULJ3 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Upf3aQ3ULJ3 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
Upf3aQ3ULJ3 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Upf3aQ3ULJ3 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Upf3aQ3ULJ3 Fezf2-202ENSMUST00000224023 1917 ntBASIC23.86■■□□□ 1.41
Upf3aQ3ULJ3 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Upf3aQ3ULJ3 Gm15820-201ENSMUST00000201566 728 ntBASIC23.86■■□□□ 1.41
Upf3aQ3ULJ3 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC23.86■■□□□ 1.41
Upf3aQ3ULJ3 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC23.85■■□□□ 1.41
Upf3aQ3ULJ3 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
Upf3aQ3ULJ3 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Upf3aQ3ULJ3 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Upf3aQ3ULJ3 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC23.84■■□□□ 1.41
Upf3aQ3ULJ3 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Upf3aQ3ULJ3 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Upf3aQ3ULJ3 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC23.84■■□□□ 1.41
Upf3aQ3ULJ3 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC23.84■■□□□ 1.41
Upf3aQ3ULJ3 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Upf3aQ3ULJ3 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC23.83■■□□□ 1.41
Upf3aQ3ULJ3 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC23.83■■□□□ 1.41
Upf3aQ3ULJ3 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Upf3aQ3ULJ3 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.4
Upf3aQ3ULJ3 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Upf3aQ3ULJ3 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC23.82■■□□□ 1.4
Upf3aQ3ULJ3 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Upf3aQ3ULJ3 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
Upf3aQ3ULJ3 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Upf3aQ3ULJ3 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC23.81■■□□□ 1.4
Upf3aQ3ULJ3 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Upf3aQ3ULJ3 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC23.81■■□□□ 1.4
Upf3aQ3ULJ3 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC23.8■■□□□ 1.4
Upf3aQ3ULJ3 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Upf3aQ3ULJ3 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Upf3aQ3ULJ3 Rps24-207ENSMUST00000224568 714 ntBASIC23.8■■□□□ 1.4
Upf3aQ3ULJ3 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
Upf3aQ3ULJ3 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
Upf3aQ3ULJ3 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
Upf3aQ3ULJ3 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
Upf3aQ3ULJ3 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
Upf3aQ3ULJ3 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
Upf3aQ3ULJ3 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Upf3aQ3ULJ3 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Retrieved 100 of 76,532 protein–RNA pairs in 46.8 ms