Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
Lmx1bO88609 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC20.37■□□□□ 0.85
Lmx1bO88609 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Lmx1bO88609 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Lmx1bO88609 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Lmx1bO88609 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Lmx1bO88609 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Lmx1bO88609 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
Lmx1bO88609 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
Lmx1bO88609 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC20.35■□□□□ 0.85
Lmx1bO88609 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Lmx1bO88609 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Lmx1bO88609 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC20.34■□□□□ 0.85
Lmx1bO88609 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Lmx1bO88609 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC20.34■□□□□ 0.85
Lmx1bO88609 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Lmx1bO88609 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC20.34■□□□□ 0.85
Lmx1bO88609 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Lmx1bO88609 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Lmx1bO88609 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC20.34■□□□□ 0.85
Lmx1bO88609 Gm4419-202ENSMUST00000226239 1431 ntBASIC20.34■□□□□ 0.85
Lmx1bO88609 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Lmx1bO88609 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Lmx1bO88609 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
Lmx1bO88609 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC20.33■□□□□ 0.85
Lmx1bO88609 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
Lmx1bO88609 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
Lmx1bO88609 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
Lmx1bO88609 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Lmx1bO88609 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Lmx1bO88609 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Lmx1bO88609 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Lmx1bO88609 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Lmx1bO88609 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Lmx1bO88609 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
Lmx1bO88609 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Lmx1bO88609 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Lmx1bO88609 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Lmx1bO88609 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Lmx1bO88609 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Lmx1bO88609 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Lmx1bO88609 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Lmx1bO88609 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Lmx1bO88609 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
Lmx1bO88609 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Lmx1bO88609 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC20.3■□□□□ 0.84
Lmx1bO88609 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Lmx1bO88609 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Lmx1bO88609 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
Lmx1bO88609 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
Lmx1bO88609 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Lmx1bO88609 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Lmx1bO88609 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Lmx1bO88609 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Lmx1bO88609 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC20.29■□□□□ 0.84
Lmx1bO88609 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Lmx1bO88609 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Lmx1bO88609 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
Lmx1bO88609 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Lmx1bO88609 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Lmx1bO88609 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Lmx1bO88609 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Lmx1bO88609 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Lmx1bO88609 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
Lmx1bO88609 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
Lmx1bO88609 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Lmx1bO88609 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Lmx1bO88609 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Lmx1bO88609 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Lmx1bO88609 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Lmx1bO88609 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Lmx1bO88609 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Lmx1bO88609 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC20.25■□□□□ 0.83
Lmx1bO88609 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Lmx1bO88609 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Lmx1bO88609 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Lmx1bO88609 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC20.25■□□□□ 0.83
Lmx1bO88609 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Lmx1bO88609 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Lmx1bO88609 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Lmx1bO88609 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Lmx1bO88609 Gm5067-201ENSMUST00000170449 1009 ntBASIC20.24■□□□□ 0.83
Lmx1bO88609 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Lmx1bO88609 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Lmx1bO88609 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Lmx1bO88609 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Lmx1bO88609 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC20.23■□□□□ 0.83
Lmx1bO88609 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Lmx1bO88609 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Lmx1bO88609 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
Lmx1bO88609 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Lmx1bO88609 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Lmx1bO88609 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC20.21■□□□□ 0.83
Lmx1bO88609 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Lmx1bO88609 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Lmx1bO88609 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC20.21■□□□□ 0.83
Lmx1bO88609 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Lmx1bO88609 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Lmx1bO88609 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
Lmx1bO88609 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC20.2■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 13.7 ms