Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Chd3B1AR17 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
Chd3B1AR17 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
Chd3B1AR17 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC22.34■■□□□ 1.17
Chd3B1AR17 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC22.34■■□□□ 1.17
Chd3B1AR17 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Chd3B1AR17 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Chd3B1AR17 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.17
Chd3B1AR17 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC22.33■■□□□ 1.17
Chd3B1AR17 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
Chd3B1AR17 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Chd3B1AR17 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC22.32■■□□□ 1.16
Chd3B1AR17 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC22.32■■□□□ 1.16
Chd3B1AR17 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC22.32■■□□□ 1.16
Chd3B1AR17 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Chd3B1AR17 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Chd3B1AR17 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Chd3B1AR17 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Chd3B1AR17 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC22.3■■□□□ 1.16
Chd3B1AR17 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.16
Chd3B1AR17 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
Chd3B1AR17 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Chd3B1AR17 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Chd3B1AR17 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC22.29■■□□□ 1.16
Chd3B1AR17 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC22.29■■□□□ 1.16
Chd3B1AR17 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC22.29■■□□□ 1.16
Chd3B1AR17 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
Chd3B1AR17 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC22.29■■□□□ 1.16
Chd3B1AR17 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Chd3B1AR17 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Chd3B1AR17 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Chd3B1AR17 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
Chd3B1AR17 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
Chd3B1AR17 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
Chd3B1AR17 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC22.28■■□□□ 1.16
Chd3B1AR17 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Chd3B1AR17 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC22.28■■□□□ 1.16
Chd3B1AR17 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC22.28■■□□□ 1.16
Chd3B1AR17 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Chd3B1AR17 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC22.27■■□□□ 1.16
Chd3B1AR17 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
Chd3B1AR17 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Chd3B1AR17 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
Chd3B1AR17 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
Chd3B1AR17 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC22.27■■□□□ 1.16
Chd3B1AR17 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Chd3B1AR17 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
Chd3B1AR17 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Chd3B1AR17 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Chd3B1AR17 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC22.25■■□□□ 1.15
Chd3B1AR17 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC22.24■■□□□ 1.15
Chd3B1AR17 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Chd3B1AR17 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC22.24■■□□□ 1.15
Chd3B1AR17 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Chd3B1AR17 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Chd3B1AR17 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Chd3B1AR17 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC22.23■■□□□ 1.15
Chd3B1AR17 Gm5067-201ENSMUST00000170449 1009 ntBASIC22.23■■□□□ 1.15
Chd3B1AR17 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Chd3B1AR17 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC22.22■■□□□ 1.15
Chd3B1AR17 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Chd3B1AR17 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC22.22■■□□□ 1.15
Chd3B1AR17 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC22.22■■□□□ 1.15
Chd3B1AR17 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC22.21■■□□□ 1.15
Chd3B1AR17 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
Chd3B1AR17 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC22.21■■□□□ 1.15
Chd3B1AR17 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Chd3B1AR17 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Chd3B1AR17 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC22.21■■□□□ 1.15
Chd3B1AR17 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
Chd3B1AR17 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC22.2■■□□□ 1.15
Chd3B1AR17 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Chd3B1AR17 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC22.2■■□□□ 1.14
Chd3B1AR17 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC22.2■■□□□ 1.14
Chd3B1AR17 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC22.19■■□□□ 1.14
Chd3B1AR17 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Chd3B1AR17 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Chd3B1AR17 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
Chd3B1AR17 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC22.18■■□□□ 1.14
Chd3B1AR17 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
Chd3B1AR17 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Chd3B1AR17 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC22.18■■□□□ 1.14
Chd3B1AR17 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Chd3B1AR17 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Chd3B1AR17 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC22.16■■□□□ 1.14
Chd3B1AR17 AC164433.2-201ENSMUST00000226346 1701 ntBASIC22.16■■□□□ 1.14
Chd3B1AR17 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
Chd3B1AR17 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC22.16■■□□□ 1.14
Chd3B1AR17 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC22.15■■□□□ 1.14
Chd3B1AR17 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC22.15■■□□□ 1.14
Chd3B1AR17 Gm5921-201ENSMUST00000075898 882 ntBASIC22.15■■□□□ 1.14
Chd3B1AR17 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Chd3B1AR17 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Chd3B1AR17 Gm15039-201ENSMUST00000118914 875 ntBASIC22.15■■□□□ 1.14
Chd3B1AR17 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
Chd3B1AR17 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC22.14■■□□□ 1.14
Chd3B1AR17 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Chd3B1AR17 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC22.14■■□□□ 1.13
Chd3B1AR17 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
Chd3B1AR17 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Retrieved 100 of 76,532 protein–RNA pairs in 71.6 ms