Protein–RNA interactions for Protein: Q9BQW3

EBF4, Transcription factor COE4, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF4Q9BQW3 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
EBF4Q9BQW3 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
EBF4Q9BQW3 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
EBF4Q9BQW3 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
EBF4Q9BQW3 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
EBF4Q9BQW3 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
EBF4Q9BQW3 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
EBF4Q9BQW3 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC17.68■□□□□ 0.42
EBF4Q9BQW3 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
EBF4Q9BQW3 MIR149-201ENST00000384879 89 ntBASIC17.68■□□□□ 0.42
EBF4Q9BQW3 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
EBF4Q9BQW3 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
EBF4Q9BQW3 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC17.68■□□□□ 0.42
EBF4Q9BQW3 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
EBF4Q9BQW3 AC026271.3-201ENST00000571884 352 ntBASIC17.68■□□□□ 0.42
EBF4Q9BQW3 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
EBF4Q9BQW3 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC17.68■□□□□ 0.42
EBF4Q9BQW3 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC17.68■□□□□ 0.42
EBF4Q9BQW3 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
EBF4Q9BQW3 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
EBF4Q9BQW3 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
EBF4Q9BQW3 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC17.68■□□□□ 0.42
EBF4Q9BQW3 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC17.67■□□□□ 0.42
EBF4Q9BQW3 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC17.67■□□□□ 0.42
EBF4Q9BQW3 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC17.67■□□□□ 0.42
EBF4Q9BQW3 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
EBF4Q9BQW3 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
EBF4Q9BQW3 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
EBF4Q9BQW3 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC17.67■□□□□ 0.42
EBF4Q9BQW3 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
EBF4Q9BQW3 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
EBF4Q9BQW3 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
EBF4Q9BQW3 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
EBF4Q9BQW3 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
EBF4Q9BQW3 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
EBF4Q9BQW3 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
EBF4Q9BQW3 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC17.67■□□□□ 0.42
EBF4Q9BQW3 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC17.67■□□□□ 0.42
EBF4Q9BQW3 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
EBF4Q9BQW3 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
EBF4Q9BQW3 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
EBF4Q9BQW3 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC17.67■□□□□ 0.42
EBF4Q9BQW3 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
EBF4Q9BQW3 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC17.67■□□□□ 0.42
EBF4Q9BQW3 KLF13-207ENST00000560473 489 ntTSL 3 BASIC17.67■□□□□ 0.42
EBF4Q9BQW3 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC17.67■□□□□ 0.42
EBF4Q9BQW3 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC17.67■□□□□ 0.42
EBF4Q9BQW3 AL031985.4-201ENST00000642138 673 ntBASIC17.67■□□□□ 0.42
EBF4Q9BQW3 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
EBF4Q9BQW3 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC17.67■□□□□ 0.42
EBF4Q9BQW3 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
EBF4Q9BQW3 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
EBF4Q9BQW3 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
EBF4Q9BQW3 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
EBF4Q9BQW3 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
EBF4Q9BQW3 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
EBF4Q9BQW3 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
EBF4Q9BQW3 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC17.67■□□□□ 0.42
EBF4Q9BQW3 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
EBF4Q9BQW3 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
EBF4Q9BQW3 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
EBF4Q9BQW3 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
EBF4Q9BQW3 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC17.66■□□□□ 0.42
EBF4Q9BQW3 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
EBF4Q9BQW3 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
EBF4Q9BQW3 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC17.66■□□□□ 0.42
EBF4Q9BQW3 AC100803.2-201ENST00000562459 1963 ntBASIC17.66■□□□□ 0.42
EBF4Q9BQW3 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC17.66■□□□□ 0.42
EBF4Q9BQW3 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
EBF4Q9BQW3 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
EBF4Q9BQW3 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
EBF4Q9BQW3 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC17.66■□□□□ 0.42
EBF4Q9BQW3 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
EBF4Q9BQW3 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC17.66■□□□□ 0.42
EBF4Q9BQW3 UBALD1-205ENST00000590891 2641 ntBASIC17.66■□□□□ 0.42
EBF4Q9BQW3 BUB3-202ENST00000368859 667 ntTSL 3 BASIC17.66■□□□□ 0.42
EBF4Q9BQW3 B3GAT3P1-201ENST00000471720 806 ntBASIC17.66■□□□□ 0.42
EBF4Q9BQW3 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
EBF4Q9BQW3 RNA5SP413-201ENST00000516373 109 ntBASIC17.66■□□□□ 0.42
EBF4Q9BQW3 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC17.66■□□□□ 0.42
EBF4Q9BQW3 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC17.66■□□□□ 0.42
EBF4Q9BQW3 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
EBF4Q9BQW3 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
EBF4Q9BQW3 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
EBF4Q9BQW3 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.66■□□□□ 0.42
EBF4Q9BQW3 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
EBF4Q9BQW3 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC17.66■□□□□ 0.42
EBF4Q9BQW3 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
EBF4Q9BQW3 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
EBF4Q9BQW3 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
EBF4Q9BQW3 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
EBF4Q9BQW3 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
EBF4Q9BQW3 AC036111.1-201ENST00000533973 1582 ntBASIC17.66■□□□□ 0.42
EBF4Q9BQW3 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
EBF4Q9BQW3 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
EBF4Q9BQW3 AL118508.1-201ENST00000613502 2345 ntBASIC17.65■□□□□ 0.42
EBF4Q9BQW3 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
EBF4Q9BQW3 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
EBF4Q9BQW3 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
EBF4Q9BQW3 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms