Protein–RNA interactions for Protein: Q8C7M3

Trim9, E3 ubiquitin-protein ligase TRIM9, mousemouse

Predictions only

Length 817 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim9Q8C7M3 Tpm3-205ENSMUST00000121503 1139 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim9Q8C7M3 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim9Q8C7M3 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
Trim9Q8C7M3 Gm45144-201ENSMUST00000207473 354 ntTSL 5 BASIC16.81■□□□□ 0.28
Trim9Q8C7M3 Zfp810-203ENSMUST00000215202 822 ntTSL 3 BASIC16.81■□□□□ 0.28
Trim9Q8C7M3 AC164629.2-201ENSMUST00000217916 270 ntBASIC16.81■□□□□ 0.28
Trim9Q8C7M3 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim9Q8C7M3 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Trim9Q8C7M3 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
Trim9Q8C7M3 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim9Q8C7M3 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim9Q8C7M3 Adcy7-203ENSMUST00000169037 5198 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim9Q8C7M3 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Trim9Q8C7M3 Crem-203ENSMUST00000082141 2820 ntTSL 5 BASIC16.81■□□□□ 0.28
Trim9Q8C7M3 Tpm1-214ENSMUST00000113701 1677 ntTSL 5 BASIC16.81■□□□□ 0.28
Trim9Q8C7M3 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim9Q8C7M3 Lamp2-203ENSMUST00000074913 2184 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim9Q8C7M3 Bard1-201ENSMUST00000027393 5659 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim9Q8C7M3 Zdhhc15-201ENSMUST00000042070 5509 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim9Q8C7M3 Lrwd1-201ENSMUST00000006301 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim9Q8C7M3 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim9Q8C7M3 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim9Q8C7M3 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Trim9Q8C7M3 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim9Q8C7M3 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim9Q8C7M3 Rhox2h-201ENSMUST00000115162 779 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim9Q8C7M3 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim9Q8C7M3 Gm17112-201ENSMUST00000163194 432 ntTSL 3 BASIC16.8■□□□□ 0.28
Trim9Q8C7M3 Washc3-202ENSMUST00000171151 837 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Trim9Q8C7M3 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC16.8■□□□□ 0.28
Trim9Q8C7M3 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Trim9Q8C7M3 Gm45167-201ENSMUST00000208007 322 ntBASIC16.8■□□□□ 0.28
Trim9Q8C7M3 Gm20337-201ENSMUST00000219062 1118 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Trim9Q8C7M3 Gnptg-201ENSMUST00000038973 1234 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim9Q8C7M3 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim9Q8C7M3 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim9Q8C7M3 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim9Q8C7M3 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim9Q8C7M3 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC16.8■□□□□ 0.28
Trim9Q8C7M3 Tmem40-202ENSMUST00000112946 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim9Q8C7M3 Cadps2-204ENSMUST00000115356 3533 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Trim9Q8C7M3 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim9Q8C7M3 Adrb3-203ENSMUST00000121838 1864 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim9Q8C7M3 Cdadc1-204ENSMUST00000171683 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim9Q8C7M3 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Trim9Q8C7M3 Nabp1-201ENSMUST00000027279 2838 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim9Q8C7M3 Best4-ps-201ENSMUST00000129783 1380 ntBASIC16.79■□□□□ 0.28
Trim9Q8C7M3 Gm14780-201ENSMUST00000118387 2737 ntBASIC16.79■□□□□ 0.28
Trim9Q8C7M3 Dlx4os-201ENSMUST00000156477 1664 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Trim9Q8C7M3 Pdzd4-201ENSMUST00000002080 3970 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim9Q8C7M3 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim9Q8C7M3 Coq10b-202ENSMUST00000087617 834 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim9Q8C7M3 Efs-202ENSMUST00000227037 2540 ntBASIC16.79■□□□□ 0.28
Trim9Q8C7M3 Trmt6-201ENSMUST00000039554 2828 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim9Q8C7M3 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Trim9Q8C7M3 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim9Q8C7M3 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim9Q8C7M3 4930429H19Rik-201ENSMUST00000205260 1818 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Trim9Q8C7M3 Vps51-204ENSMUST00000159832 3048 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
Trim9Q8C7M3 Pias2-201ENSMUST00000114776 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim9Q8C7M3 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim9Q8C7M3 Snx18-201ENSMUST00000109241 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim9Q8C7M3 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC16.79■□□□□ 0.28
Trim9Q8C7M3 Nyx-201ENSMUST00000050434 5183 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim9Q8C7M3 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim9Q8C7M3 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim9Q8C7M3 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
Trim9Q8C7M3 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Trim9Q8C7M3 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim9Q8C7M3 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Trim9Q8C7M3 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim9Q8C7M3 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim9Q8C7M3 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim9Q8C7M3 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC16.78■□□□□ 0.28
Trim9Q8C7M3 Ren1-201ENSMUST00000094556 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim9Q8C7M3 Pde1c-203ENSMUST00000164037 3068 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Trim9Q8C7M3 Gm15598-201ENSMUST00000156965 763 ntTSL 5 BASIC16.78■□□□□ 0.28
Trim9Q8C7M3 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim9Q8C7M3 Gm4899-201ENSMUST00000178708 719 ntBASIC16.78■□□□□ 0.28
Trim9Q8C7M3 Gm42413-201ENSMUST00000196216 338 ntTSL 5 BASIC16.78■□□□□ 0.28
Trim9Q8C7M3 Wdyhv1-204ENSMUST00000226955 1094 ntBASIC16.78■□□□□ 0.28
Trim9Q8C7M3 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC16.78■□□□□ 0.28
Trim9Q8C7M3 Tssc4-201ENSMUST00000060433 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim9Q8C7M3 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim9Q8C7M3 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
Trim9Q8C7M3 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Trim9Q8C7M3 Hnf4a-201ENSMUST00000018094 4356 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim9Q8C7M3 Cd82-202ENSMUST00000099696 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim9Q8C7M3 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim9Q8C7M3 Zfp316-201ENSMUST00000051665 3054 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim9Q8C7M3 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim9Q8C7M3 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Trim9Q8C7M3 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Trim9Q8C7M3 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
Trim9Q8C7M3 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Trim9Q8C7M3 Gm3739-201ENSMUST00000165744 2011 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
Trim9Q8C7M3 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Trim9Q8C7M3 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Trim9Q8C7M3 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC16.77■□□□□ 0.28
Trim9Q8C7M3 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 21.8 ms