Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHD9Q3L8U1 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC19.18■□□□□ 0.66
CHD9Q3L8U1 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC19.18■□□□□ 0.66
CHD9Q3L8U1 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
CHD9Q3L8U1 AC108073.2-201ENST00000464002 357 ntBASIC19.18■□□□□ 0.66
CHD9Q3L8U1 AC112698.1-201ENST00000510299 916 ntBASIC19.18■□□□□ 0.66
CHD9Q3L8U1 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
CHD9Q3L8U1 AC190387.1-201ENST00000551683 408 ntBASIC19.18■□□□□ 0.66
CHD9Q3L8U1 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC19.18■□□□□ 0.66
CHD9Q3L8U1 AC138761.1-201ENST00000584393 385 ntBASIC19.18■□□□□ 0.66
CHD9Q3L8U1 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHD9Q3L8U1 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHD9Q3L8U1 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHD9Q3L8U1 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CHD9Q3L8U1 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHD9Q3L8U1 AC109322.1-201ENST00000524499 1264 ntBASIC19.18■□□□□ 0.66
CHD9Q3L8U1 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
CHD9Q3L8U1 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CHD9Q3L8U1 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC19.18■□□□□ 0.66
CHD9Q3L8U1 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC19.18■□□□□ 0.66
CHD9Q3L8U1 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHD9Q3L8U1 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC19.17■□□□□ 0.66
CHD9Q3L8U1 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC19.17■□□□□ 0.66
CHD9Q3L8U1 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CHD9Q3L8U1 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CHD9Q3L8U1 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHD9Q3L8U1 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHD9Q3L8U1 TSEN15P1-201ENST00000423257 515 ntBASIC19.17■□□□□ 0.66
CHD9Q3L8U1 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC19.17■□□□□ 0.66
CHD9Q3L8U1 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC19.17■□□□□ 0.66
CHD9Q3L8U1 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHD9Q3L8U1 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHD9Q3L8U1 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHD9Q3L8U1 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHD9Q3L8U1 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC19.17■□□□□ 0.66
CHD9Q3L8U1 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC19.17■□□□□ 0.66
CHD9Q3L8U1 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
CHD9Q3L8U1 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
CHD9Q3L8U1 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
CHD9Q3L8U1 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC19.17■□□□□ 0.66
CHD9Q3L8U1 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC19.17■□□□□ 0.66
CHD9Q3L8U1 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC19.17■□□□□ 0.66
CHD9Q3L8U1 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CHD9Q3L8U1 PUS1-205ENST00000535067 838 ntTSL 3 BASIC19.16■□□□□ 0.66
CHD9Q3L8U1 TCAP-202ENST00000578283 583 ntTSL 5 BASIC19.16■□□□□ 0.66
CHD9Q3L8U1 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC19.16■□□□□ 0.66
CHD9Q3L8U1 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.16■□□□□ 0.66
CHD9Q3L8U1 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC19.16■□□□□ 0.66
CHD9Q3L8U1 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC19.16■□□□□ 0.66
CHD9Q3L8U1 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CHD9Q3L8U1 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC19.16■□□□□ 0.66
CHD9Q3L8U1 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CHD9Q3L8U1 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
CHD9Q3L8U1 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.16■□□□□ 0.66
CHD9Q3L8U1 AC018845.2-201ENST00000568326 409 ntBASIC19.16■□□□□ 0.66
CHD9Q3L8U1 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC19.16■□□□□ 0.66
CHD9Q3L8U1 AC005593.1-201ENST00000624894 515 ntBASIC19.16■□□□□ 0.66
CHD9Q3L8U1 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC19.16■□□□□ 0.66
CHD9Q3L8U1 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CHD9Q3L8U1 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CHD9Q3L8U1 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CHD9Q3L8U1 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC19.16■□□□□ 0.66
CHD9Q3L8U1 AC148477.5-201ENST00000625164 1645 ntBASIC19.16■□□□□ 0.66
CHD9Q3L8U1 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC19.16■□□□□ 0.66
CHD9Q3L8U1 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CHD9Q3L8U1 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CHD9Q3L8U1 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CHD9Q3L8U1 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CHD9Q3L8U1 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CHD9Q3L8U1 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC19.15■□□□□ 0.66
CHD9Q3L8U1 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC19.15■□□□□ 0.66
CHD9Q3L8U1 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CHD9Q3L8U1 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
CHD9Q3L8U1 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
CHD9Q3L8U1 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CHD9Q3L8U1 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC19.15■□□□□ 0.66
CHD9Q3L8U1 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CHD9Q3L8U1 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
CHD9Q3L8U1 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CHD9Q3L8U1 PRSS29P-201ENST00000440800 595 ntBASIC19.15■□□□□ 0.66
CHD9Q3L8U1 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
CHD9Q3L8U1 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
CHD9Q3L8U1 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
CHD9Q3L8U1 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC19.15■□□□□ 0.66
CHD9Q3L8U1 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC19.15■□□□□ 0.66
CHD9Q3L8U1 AL032819.2-201ENST00000624543 2162 ntBASIC19.15■□□□□ 0.66
CHD9Q3L8U1 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CHD9Q3L8U1 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CHD9Q3L8U1 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
CHD9Q3L8U1 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC19.15■□□□□ 0.66
CHD9Q3L8U1 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
CHD9Q3L8U1 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CHD9Q3L8U1 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CHD9Q3L8U1 AP000344.2-201ENST00000512987 629 ntBASIC19.15■□□□□ 0.66
CHD9Q3L8U1 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC19.15■□□□□ 0.66
CHD9Q3L8U1 PUDP-206ENST00000540122 825 ntTSL 2 BASIC19.15■□□□□ 0.66
CHD9Q3L8U1 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC19.15■□□□□ 0.66
CHD9Q3L8U1 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CHD9Q3L8U1 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
CHD9Q3L8U1 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 66.3 ms