Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
SDC3O75056 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SDC3O75056 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC17.76■□□□□ 0.43
SDC3O75056 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SDC3O75056 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
SDC3O75056 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SDC3O75056 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SDC3O75056 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SDC3O75056 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC17.76■□□□□ 0.43
SDC3O75056 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SDC3O75056 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
SDC3O75056 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SDC3O75056 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SDC3O75056 TP73-AS1-210ENST00000637775 1455 ntBASIC17.75■□□□□ 0.43
SDC3O75056 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC17.75■□□□□ 0.43
SDC3O75056 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC17.75■□□□□ 0.43
SDC3O75056 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC17.75■□□□□ 0.43
SDC3O75056 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
SDC3O75056 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
SDC3O75056 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC17.75■□□□□ 0.43
SDC3O75056 MED22-202ENST00000371999 987 ntTSL 3 BASIC17.75■□□□□ 0.43
SDC3O75056 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC17.75■□□□□ 0.43
SDC3O75056 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC17.75■□□□□ 0.43
SDC3O75056 AL031284.1-201ENST00000419297 478 ntBASIC17.75■□□□□ 0.43
SDC3O75056 KRT18P67-201ENST00000432816 1264 ntBASIC17.75■□□□□ 0.43
SDC3O75056 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC17.75■□□□□ 0.43
SDC3O75056 AF186996.4-201ENST00000467186 377 ntBASIC17.75■□□□□ 0.43
SDC3O75056 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC17.75■□□□□ 0.43
SDC3O75056 SLC25A1P1-201ENST00000528351 927 ntBASIC17.75■□□□□ 0.43
SDC3O75056 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC17.75■□□□□ 0.43
SDC3O75056 IRF8-202ENST00000562492 946 ntTSL 3 BASIC17.75■□□□□ 0.43
SDC3O75056 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC17.75■□□□□ 0.43
SDC3O75056 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC17.75■□□□□ 0.43
SDC3O75056 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
SDC3O75056 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC17.75■□□□□ 0.43
SDC3O75056 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SDC3O75056 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SDC3O75056 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SDC3O75056 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC17.75■□□□□ 0.43
SDC3O75056 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
SDC3O75056 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SDC3O75056 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
SDC3O75056 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC17.74■□□□□ 0.43
SDC3O75056 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC17.74■□□□□ 0.43
SDC3O75056 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC17.74■□□□□ 0.43
SDC3O75056 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC17.74■□□□□ 0.43
SDC3O75056 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SDC3O75056 AC112777.1-201ENST00000540175 1423 ntBASIC17.74■□□□□ 0.43
SDC3O75056 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SDC3O75056 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SDC3O75056 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SDC3O75056 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SDC3O75056 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SDC3O75056 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SDC3O75056 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC17.74■□□□□ 0.43
SDC3O75056 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC17.74■□□□□ 0.43
SDC3O75056 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC17.74■□□□□ 0.43
SDC3O75056 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
SDC3O75056 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC17.74■□□□□ 0.43
SDC3O75056 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC17.74■□□□□ 0.43
SDC3O75056 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC17.74■□□□□ 0.43
SDC3O75056 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC17.74■□□□□ 0.43
SDC3O75056 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SDC3O75056 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC17.74■□□□□ 0.43
SDC3O75056 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC17.74■□□□□ 0.43
SDC3O75056 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
SDC3O75056 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC17.74■□□□□ 0.43
SDC3O75056 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
SDC3O75056 COBL-210ENST00000632460 1941 ntTSL 5 BASIC17.74■□□□□ 0.43
SDC3O75056 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
SDC3O75056 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
SDC3O75056 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SDC3O75056 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC17.73■□□□□ 0.43
SDC3O75056 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SDC3O75056 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC17.73■□□□□ 0.43
SDC3O75056 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
SDC3O75056 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SDC3O75056 TLE1-202ENST00000376484 666 ntTSL 3 BASIC17.73■□□□□ 0.43
SDC3O75056 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
SDC3O75056 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC17.73■□□□□ 0.43
SDC3O75056 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC17.73■□□□□ 0.43
SDC3O75056 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC17.73■□□□□ 0.43
SDC3O75056 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC17.73■□□□□ 0.43
SDC3O75056 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC17.73■□□□□ 0.43
SDC3O75056 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC17.73■□□□□ 0.43
SDC3O75056 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC17.73■□□□□ 0.43
SDC3O75056 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC17.73■□□□□ 0.43
SDC3O75056 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC17.73■□□□□ 0.43
SDC3O75056 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
SDC3O75056 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SDC3O75056 AC006538.3-201ENST00000612495 578 ntBASIC17.73■□□□□ 0.43
SDC3O75056 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC17.73■□□□□ 0.43
SDC3O75056 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SDC3O75056 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SDC3O75056 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SDC3O75056 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
SDC3O75056 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SDC3O75056 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC17.73■□□□□ 0.43
SDC3O75056 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SDC3O75056 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC17.73■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms