Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SUMO3P55854 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
SUMO3P55854 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SUMO3P55854 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC16.48■□□□□ 0.23
SUMO3P55854 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC16.48■□□□□ 0.23
SUMO3P55854 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SUMO3P55854 AL645929.1-201ENST00000420084 975 ntBASIC16.48■□□□□ 0.23
SUMO3P55854 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
SUMO3P55854 KRT18P65-201ENST00000439811 1286 ntBASIC16.48■□□□□ 0.23
SUMO3P55854 SPDYE13P-201ENST00000445314 798 ntBASIC16.48■□□□□ 0.23
SUMO3P55854 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC16.48■□□□□ 0.23
SUMO3P55854 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.23
SUMO3P55854 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC16.48■□□□□ 0.23
SUMO3P55854 ANKRD20A8P-203ENST00000641373 517 ntBASIC16.48■□□□□ 0.23
SUMO3P55854 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
SUMO3P55854 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SUMO3P55854 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SUMO3P55854 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
SUMO3P55854 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SUMO3P55854 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
SUMO3P55854 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC16.48■□□□□ 0.23
SUMO3P55854 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SUMO3P55854 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
SUMO3P55854 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SUMO3P55854 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SUMO3P55854 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC16.47■□□□□ 0.23
SUMO3P55854 AC022898.2-201ENST00000616822 1312 ntBASIC16.47■□□□□ 0.23
SUMO3P55854 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SUMO3P55854 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SUMO3P55854 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SUMO3P55854 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
SUMO3P55854 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SUMO3P55854 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC16.47■□□□□ 0.23
SUMO3P55854 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SUMO3P55854 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SUMO3P55854 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SUMO3P55854 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SUMO3P55854 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC16.47■□□□□ 0.23
SUMO3P55854 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
SUMO3P55854 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC16.47■□□□□ 0.23
SUMO3P55854 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
SUMO3P55854 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SUMO3P55854 AL031133.1-201ENST00000406807 723 ntBASIC16.47■□□□□ 0.23
SUMO3P55854 SLC25A6P5-201ENST00000435663 894 ntBASIC16.47■□□□□ 0.23
SUMO3P55854 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC16.47■□□□□ 0.23
SUMO3P55854 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC16.47■□□□□ 0.23
SUMO3P55854 MNT-208ENST00000575394 606 ntTSL 4 BASIC16.47■□□□□ 0.23
SUMO3P55854 REXO1L9P-201ENST00000604264 2108 ntBASIC16.47■□□□□ 0.23
SUMO3P55854 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
SUMO3P55854 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SUMO3P55854 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
SUMO3P55854 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SUMO3P55854 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC16.47■□□□□ 0.23
SUMO3P55854 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SUMO3P55854 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SUMO3P55854 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SUMO3P55854 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SUMO3P55854 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SUMO3P55854 AC138028.4-201ENST00000564984 1845 ntBASIC16.47■□□□□ 0.23
SUMO3P55854 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC16.47■□□□□ 0.23
SUMO3P55854 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SUMO3P55854 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC16.47■□□□□ 0.23
SUMO3P55854 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
SUMO3P55854 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SUMO3P55854 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
SUMO3P55854 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
SUMO3P55854 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC16.46■□□□□ 0.23
SUMO3P55854 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SUMO3P55854 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
SUMO3P55854 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC16.46■□□□□ 0.23
SUMO3P55854 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SUMO3P55854 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
SUMO3P55854 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SUMO3P55854 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC16.46■□□□□ 0.23
SUMO3P55854 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SUMO3P55854 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SUMO3P55854 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC16.46■□□□□ 0.23
SUMO3P55854 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
SUMO3P55854 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
SUMO3P55854 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC16.46■□□□□ 0.23
SUMO3P55854 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC16.46■□□□□ 0.23
SUMO3P55854 RMI2-205ENST00000576027 818 ntTSL 2 BASIC16.46■□□□□ 0.23
SUMO3P55854 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC16.46■□□□□ 0.23
SUMO3P55854 AL390719.2-201ENST00000606993 987 ntBASIC16.46■□□□□ 0.23
SUMO3P55854 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC16.46■□□□□ 0.23
SUMO3P55854 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC16.46■□□□□ 0.23
SUMO3P55854 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SUMO3P55854 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SUMO3P55854 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
SUMO3P55854 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SUMO3P55854 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SUMO3P55854 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SUMO3P55854 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SUMO3P55854 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SUMO3P55854 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SUMO3P55854 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
SUMO3P55854 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
SUMO3P55854 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
SUMO3P55854 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC16.45■□□□□ 0.22
SUMO3P55854 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms