Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
NPHP1O15259 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC22.92■■□□□ 1.26
NPHP1O15259 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
NPHP1O15259 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
NPHP1O15259 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
NPHP1O15259 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC22.92■■□□□ 1.26
NPHP1O15259 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
NPHP1O15259 AL158211.5-201ENST00000623583 2518 ntBASIC22.91■■□□□ 1.26
NPHP1O15259 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
NPHP1O15259 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC22.91■■□□□ 1.26
NPHP1O15259 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC22.91■■□□□ 1.26
NPHP1O15259 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC22.91■■□□□ 1.26
NPHP1O15259 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC22.91■■□□□ 1.26
NPHP1O15259 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
NPHP1O15259 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
NPHP1O15259 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC22.91■■□□□ 1.26
NPHP1O15259 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC22.91■■□□□ 1.26
NPHP1O15259 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC22.91■■□□□ 1.26
NPHP1O15259 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC22.91■■□□□ 1.26
NPHP1O15259 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
NPHP1O15259 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
NPHP1O15259 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC22.91■■□□□ 1.26
NPHP1O15259 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
NPHP1O15259 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
NPHP1O15259 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC22.91■■□□□ 1.26
NPHP1O15259 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
NPHP1O15259 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
NPHP1O15259 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC22.9■■□□□ 1.26
NPHP1O15259 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
NPHP1O15259 AC243591.1-201ENST00000452967 1364 ntBASIC22.9■■□□□ 1.26
NPHP1O15259 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
NPHP1O15259 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
NPHP1O15259 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC22.9■■□□□ 1.26
NPHP1O15259 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC22.9■■□□□ 1.26
NPHP1O15259 PMS2P7-201ENST00000506558 1336 ntBASIC22.9■■□□□ 1.26
NPHP1O15259 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC22.9■■□□□ 1.26
NPHP1O15259 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
NPHP1O15259 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
NPHP1O15259 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC22.9■■□□□ 1.26
NPHP1O15259 RCN1P2-201ENST00000398357 915 ntBASIC22.9■■□□□ 1.26
NPHP1O15259 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
NPHP1O15259 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC22.9■■□□□ 1.26
NPHP1O15259 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC22.9■■□□□ 1.26
NPHP1O15259 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC22.9■■□□□ 1.26
NPHP1O15259 AC106730.1-201ENST00000566722 1090 ntBASIC22.9■■□□□ 1.26
NPHP1O15259 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC22.9■■□□□ 1.26
NPHP1O15259 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
NPHP1O15259 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
NPHP1O15259 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC22.9■■□□□ 1.26
NPHP1O15259 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
NPHP1O15259 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC22.9■■□□□ 1.26
NPHP1O15259 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC22.9■■□□□ 1.26
NPHP1O15259 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC22.9■■□□□ 1.26
NPHP1O15259 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC22.9■■□□□ 1.26
NPHP1O15259 ZNF259P1-201ENST00000407656 1365 ntBASIC22.89■■□□□ 1.26
NPHP1O15259 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC22.89■■□□□ 1.26
NPHP1O15259 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC22.89■■□□□ 1.26
NPHP1O15259 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC22.89■■□□□ 1.26
NPHP1O15259 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
NPHP1O15259 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
NPHP1O15259 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
NPHP1O15259 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC22.89■■□□□ 1.25
NPHP1O15259 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
NPHP1O15259 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC22.89■■□□□ 1.25
NPHP1O15259 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
NPHP1O15259 RPL13AP23-201ENST00000480739 586 ntBASIC22.89■■□□□ 1.25
NPHP1O15259 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC22.89■■□□□ 1.25
NPHP1O15259 AC139887.3-201ENST00000568585 713 ntBASIC22.89■■□□□ 1.25
NPHP1O15259 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC22.89■■□□□ 1.25
NPHP1O15259 MTDHP3-201ENST00000594186 672 ntBASIC22.89■■□□□ 1.25
NPHP1O15259 PRKN-208ENST00000610470 531 ntTSL 2 BASIC22.89■■□□□ 1.25
NPHP1O15259 PRKN-209ENST00000612485 225 ntTSL 5 BASIC22.89■■□□□ 1.25
NPHP1O15259 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC22.89■■□□□ 1.25
NPHP1O15259 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC22.89■■□□□ 1.25
NPHP1O15259 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
NPHP1O15259 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC22.89■■□□□ 1.25
NPHP1O15259 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC22.89■■□□□ 1.25
NPHP1O15259 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
NPHP1O15259 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC22.89■■□□□ 1.25
NPHP1O15259 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
NPHP1O15259 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
NPHP1O15259 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC22.89■■□□□ 1.25
NPHP1O15259 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
NPHP1O15259 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
NPHP1O15259 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
NPHP1O15259 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC22.89■■□□□ 1.25
NPHP1O15259 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
NPHP1O15259 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
NPHP1O15259 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
NPHP1O15259 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC22.88■■□□□ 1.25
NPHP1O15259 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
NPHP1O15259 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
NPHP1O15259 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
NPHP1O15259 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC22.88■■□□□ 1.25
NPHP1O15259 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC22.88■■□□□ 1.25
NPHP1O15259 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC22.88■■□□□ 1.25
NPHP1O15259 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC22.88■■□□□ 1.25
NPHP1O15259 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
NPHP1O15259 NFYC-AS1-201ENST00000606277 1687 ntBASIC22.88■■□□□ 1.25
NPHP1O15259 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC22.88■■□□□ 1.25
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms