Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Adam23-205ENSMUST00000114107 6110 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
Trim40Q3UWA4 Nt5e-201ENSMUST00000034992 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trim40Q3UWA4 Hykk-201ENSMUST00000039742 5110 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trim40Q3UWA4 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trim40Q3UWA4 Gm16796-201ENSMUST00000126086 3172 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Trim40Q3UWA4 Dhx34-203ENSMUST00000119102 4310 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
Trim40Q3UWA4 Slc4a7-201ENSMUST00000057015 8132 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trim40Q3UWA4 Srcin1-202ENSMUST00000107593 3733 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
Trim40Q3UWA4 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Trim40Q3UWA4 Megf9-202ENSMUST00000107359 7924 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trim40Q3UWA4 Slc35a2-202ENSMUST00000115660 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trim40Q3UWA4 Gm4756-202ENSMUST00000208039 2344 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
Trim40Q3UWA4 Frmd4b-203ENSMUST00000113355 4913 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Trim40Q3UWA4 Pla2g16-203ENSMUST00000136756 1901 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trim40Q3UWA4 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trim40Q3UWA4 Pqlc3-208ENSMUST00000222203 1706 ntTSL 5 BASIC14.46□□□□□ -0.09
Trim40Q3UWA4 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim40Q3UWA4 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim40Q3UWA4 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
Trim40Q3UWA4 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC14.46□□□□□ -0.09
Trim40Q3UWA4 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim40Q3UWA4 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Trim40Q3UWA4 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC14.46□□□□□ -0.09
Trim40Q3UWA4 Men1-206ENSMUST00000113502 2652 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Trim40Q3UWA4 Pccb-201ENSMUST00000035116 2320 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim40Q3UWA4 Ptn-201ENSMUST00000101534 1614 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim40Q3UWA4 Csdc2-201ENSMUST00000038757 2490 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim40Q3UWA4 Ush1g-201ENSMUST00000103037 3306 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim40Q3UWA4 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC14.46□□□□□ -0.09
Trim40Q3UWA4 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
Trim40Q3UWA4 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Trim40Q3UWA4 Gm29994-201ENSMUST00000195495 1193 ntBASIC14.46□□□□□ -0.09
Trim40Q3UWA4 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
Trim40Q3UWA4 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC14.46□□□□□ -0.09
Trim40Q3UWA4 Spcs1-207ENSMUST00000228767 1008 ntBASIC14.46□□□□□ -0.09
Trim40Q3UWA4 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim40Q3UWA4 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim40Q3UWA4 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim40Q3UWA4 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim40Q3UWA4 Rad54l2-201ENSMUST00000046502 9305 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Trim40Q3UWA4 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
Trim40Q3UWA4 Camta1-203ENSMUST00000105668 4962 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
Trim40Q3UWA4 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.1
Trim40Q3UWA4 Col7a1-201ENSMUST00000026740 9198 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim40Q3UWA4 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Trim40Q3UWA4 Clcnka-201ENSMUST00000042617 2428 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim40Q3UWA4 B4galt3-202ENSMUST00000111313 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim40Q3UWA4 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim40Q3UWA4 Olfr1372-ps1-202ENSMUST00000203403 9812 ntTSL 5 BASIC14.45□□□□□ -0.1
Trim40Q3UWA4 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Trim40Q3UWA4 Sema6b-202ENSMUST00000167545 3847 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim40Q3UWA4 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Trim40Q3UWA4 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC14.45□□□□□ -0.1
Trim40Q3UWA4 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC14.45□□□□□ -0.1
Trim40Q3UWA4 Ldb3-208ENSMUST00000228044 1883 ntAPPRIS ALT2 BASIC14.45□□□□□ -0.1
Trim40Q3UWA4 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim40Q3UWA4 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Trim40Q3UWA4 Etl4-208ENSMUST00000114614 5898 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim40Q3UWA4 Ablim2-205ENSMUST00000114205 2579 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
Trim40Q3UWA4 Kif1c-203ENSMUST00000102554 6684 ntAPPRIS P2 TSL 5 BASIC14.45□□□□□ -0.1
Trim40Q3UWA4 Klhl9-201ENSMUST00000094993 4174 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
Trim40Q3UWA4 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim40Q3UWA4 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim40Q3UWA4 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC14.45□□□□□ -0.1
Trim40Q3UWA4 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim40Q3UWA4 Pigv-201ENSMUST00000062118 3979 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim40Q3UWA4 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Trim40Q3UWA4 Slc43a1-203ENSMUST00000111625 2487 ntAPPRIS P4 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim40Q3UWA4 Gm7669-201ENSMUST00000210184 1603 ntBASIC14.44□□□□□ -0.1
Trim40Q3UWA4 Asap1-216ENSMUST00000177083 4415 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim40Q3UWA4 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim40Q3UWA4 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim40Q3UWA4 Snx19-201ENSMUST00000164099 5762 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim40Q3UWA4 Cxcr3-201ENSMUST00000056614 1731 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim40Q3UWA4 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim40Q3UWA4 Gm9889-202ENSMUST00000206983 1577 ntBASIC14.44□□□□□ -0.1
Trim40Q3UWA4 Ccny-201ENSMUST00000053917 4017 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim40Q3UWA4 Wfikkn1-201ENSMUST00000095487 1981 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim40Q3UWA4 Gm37297-201ENSMUST00000192974 2384 ntBASIC14.44□□□□□ -0.1
Trim40Q3UWA4 Scamp1-201ENSMUST00000022197 4259 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim40Q3UWA4 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim40Q3UWA4 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC14.44□□□□□ -0.1
Trim40Q3UWA4 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim40Q3UWA4 Gm37055-201ENSMUST00000191866 133 ntBASIC14.44□□□□□ -0.1
Trim40Q3UWA4 AC122351.1-201ENSMUST00000220467 126 ntBASIC14.44□□□□□ -0.1
Trim40Q3UWA4 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim40Q3UWA4 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim40Q3UWA4 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim40Q3UWA4 Gm44291-201ENSMUST00000203102 2865 ntBASIC14.44□□□□□ -0.1
Trim40Q3UWA4 Zbtb7b-204ENSMUST00000107435 4333 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim40Q3UWA4 Arid3a-203ENSMUST00000105377 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim40Q3UWA4 Acot10-201ENSMUST00000052910 1537 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
Trim40Q3UWA4 Klhdc8b-207ENSMUST00000193286 2956 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim40Q3UWA4 Irx3os-201ENSMUST00000062522 2988 ntTSL 5 BASIC14.44□□□□□ -0.1
Trim40Q3UWA4 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Trim40Q3UWA4 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC14.44□□□□□ -0.1
Trim40Q3UWA4 Il11ra1-201ENSMUST00000098132 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim40Q3UWA4 Zfp612-202ENSMUST00000212754 4863 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim40Q3UWA4 Iqcb1-201ENSMUST00000023535 2257 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim40Q3UWA4 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 34.9 ms