Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 POLD2P1-201ENST00000511220 997 ntBASIC22.33■■□□□ 1.16
COL4A1P02462 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC22.33■■□□□ 1.16
COL4A1P02462 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC22.33■■□□□ 1.16
COL4A1P02462 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
COL4A1P02462 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
COL4A1P02462 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC22.32■■□□□ 1.16
COL4A1P02462 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC22.32■■□□□ 1.16
COL4A1P02462 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC22.32■■□□□ 1.16
COL4A1P02462 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC22.32■■□□□ 1.16
COL4A1P02462 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC22.32■■□□□ 1.16
COL4A1P02462 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC22.32■■□□□ 1.16
COL4A1P02462 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
COL4A1P02462 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC22.32■■□□□ 1.16
COL4A1P02462 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC22.32■■□□□ 1.16
COL4A1P02462 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
COL4A1P02462 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
COL4A1P02462 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC22.32■■□□□ 1.16
COL4A1P02462 KRT8P47-201ENST00000604727 1398 ntBASIC22.32■■□□□ 1.16
COL4A1P02462 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
COL4A1P02462 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
COL4A1P02462 IGHV3-22-201ENST00000520721 359 ntBASIC22.32■■□□□ 1.16
COL4A1P02462 AC021087.4-201ENST00000563761 564 ntBASIC22.32■■□□□ 1.16
COL4A1P02462 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC22.32■■□□□ 1.16
COL4A1P02462 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC22.32■■□□□ 1.16
COL4A1P02462 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC22.31■■□□□ 1.16
COL4A1P02462 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC22.31■■□□□ 1.16
COL4A1P02462 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
COL4A1P02462 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
COL4A1P02462 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC22.31■■□□□ 1.16
COL4A1P02462 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC22.31■■□□□ 1.16
COL4A1P02462 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
COL4A1P02462 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
COL4A1P02462 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC22.31■■□□□ 1.16
COL4A1P02462 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC22.31■■□□□ 1.16
COL4A1P02462 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC22.31■■□□□ 1.16
COL4A1P02462 AC073648.2-201ENST00000510116 352 ntBASIC22.31■■□□□ 1.16
COL4A1P02462 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC22.31■■□□□ 1.16
COL4A1P02462 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
COL4A1P02462 FAM215A-202ENST00000632077 792 ntBASIC22.31■■□□□ 1.16
COL4A1P02462 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
COL4A1P02462 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC22.31■■□□□ 1.16
COL4A1P02462 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
COL4A1P02462 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL4A1P02462 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL4A1P02462 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC22.3■■□□□ 1.16
COL4A1P02462 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC22.3■■□□□ 1.16
COL4A1P02462 MTDHP3-201ENST00000594186 672 ntBASIC22.3■■□□□ 1.16
COL4A1P02462 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC22.3■■□□□ 1.16
COL4A1P02462 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
COL4A1P02462 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL4A1P02462 AC126763.1-201ENST00000552015 2118 ntBASIC22.3■■□□□ 1.16
COL4A1P02462 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL4A1P02462 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC22.3■■□□□ 1.16
COL4A1P02462 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC22.3■■□□□ 1.16
COL4A1P02462 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC22.3■■□□□ 1.16
COL4A1P02462 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
COL4A1P02462 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC22.3■■□□□ 1.16
COL4A1P02462 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL4A1P02462 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL4A1P02462 PAN3-AS1-201ENST00000563843 1351 ntBASIC22.3■■□□□ 1.16
COL4A1P02462 AF186996.4-201ENST00000467186 377 ntBASIC22.3■■□□□ 1.16
COL4A1P02462 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC22.3■■□□□ 1.16
COL4A1P02462 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC22.3■■□□□ 1.16
COL4A1P02462 AC139887.3-201ENST00000568585 713 ntBASIC22.3■■□□□ 1.16
COL4A1P02462 AC025062.2-201ENST00000605477 670 ntBASIC22.3■■□□□ 1.16
COL4A1P02462 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC22.3■■□□□ 1.16
COL4A1P02462 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC22.3■■□□□ 1.16
COL4A1P02462 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
COL4A1P02462 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC22.29■■□□□ 1.16
COL4A1P02462 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC22.29■■□□□ 1.16
COL4A1P02462 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
COL4A1P02462 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC22.29■■□□□ 1.16
COL4A1P02462 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
COL4A1P02462 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC22.29■■□□□ 1.16
COL4A1P02462 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC22.29■■□□□ 1.16
COL4A1P02462 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC22.29■■□□□ 1.16
COL4A1P02462 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
COL4A1P02462 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
COL4A1P02462 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC22.29■■□□□ 1.16
COL4A1P02462 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
COL4A1P02462 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
COL4A1P02462 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
COL4A1P02462 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC22.29■■□□□ 1.16
COL4A1P02462 RBM17P3-201ENST00000417687 1192 ntBASIC22.29■■□□□ 1.16
COL4A1P02462 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC22.29■■□□□ 1.16
COL4A1P02462 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC22.29■■□□□ 1.16
COL4A1P02462 AC106730.1-201ENST00000566722 1090 ntBASIC22.29■■□□□ 1.16
COL4A1P02462 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC22.29■■□□□ 1.16
COL4A1P02462 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
COL4A1P02462 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC22.29■■□□□ 1.16
COL4A1P02462 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL4A1P02462 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL4A1P02462 AP005117.1-201ENST00000584346 1413 ntBASIC22.28■■□□□ 1.16
COL4A1P02462 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC22.28■■□□□ 1.16
COL4A1P02462 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL4A1P02462 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC22.28■■□□□ 1.16
COL4A1P02462 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
COL4A1P02462 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL4A1P02462 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL4A1P02462 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms