Protein–RNA interactions for Protein: P97952

Scn1b, Sodium channel subunit beta-1, mousemouse

Predictions only

Length 218 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn1bP97952 Ube3a-201ENSMUST00000107537 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Scn1bP97952 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Scn1bP97952 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Scn1bP97952 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Scn1bP97952 0610005C13Rik-207ENSMUST00000210866 2434 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Scn1bP97952 Pxylp1-204ENSMUST00000120101 3189 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Scn1bP97952 Nhs-202ENSMUST00000087085 8805 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Scn1bP97952 Pdhb-201ENSMUST00000022268 1513 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Scn1bP97952 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Scn1bP97952 Kif3a-201ENSMUST00000057330 2290 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Scn1bP97952 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Scn1bP97952 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC14.16□□□□□ -0.14
Scn1bP97952 Thumpd1-201ENSMUST00000033236 2689 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Scn1bP97952 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Scn1bP97952 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC14.16□□□□□ -0.14
Scn1bP97952 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Scn1bP97952 Gm36967-201ENSMUST00000193814 266 ntBASIC14.16□□□□□ -0.14
Scn1bP97952 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Scn1bP97952 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
Scn1bP97952 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Scn1bP97952 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Scn1bP97952 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Scn1bP97952 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Scn1bP97952 Ccdc88c-202ENSMUST00000085096 6313 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Scn1bP97952 Tsc22d1-202ENSMUST00000048371 4818 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Scn1bP97952 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Scn1bP97952 Exo5-204ENSMUST00000177880 1969 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
Scn1bP97952 Exo5-201ENSMUST00000030375 1996 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Scn1bP97952 Gm996-201ENSMUST00000114217 4881 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
Scn1bP97952 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Scn1bP97952 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Scn1bP97952 Gm43951-201ENSMUST00000204457 2889 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Scn1bP97952 Gm32996-201ENSMUST00000199828 1447 ntBASIC14.15□□□□□ -0.14
Scn1bP97952 Slc4a4-207ENSMUST00000148750 7931 ntAPPRIS P3 TSL 5 BASIC14.15□□□□□ -0.14
Scn1bP97952 Efs-202ENSMUST00000227037 2540 ntBASIC14.15□□□□□ -0.14
Scn1bP97952 Bag6-201ENSMUST00000025250 3858 ntAPPRIS P3 TSL 5 BASIC14.15□□□□□ -0.14
Scn1bP97952 Ss18-201ENSMUST00000040924 3090 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Scn1bP97952 Efcab14-204ENSMUST00000106525 2792 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Scn1bP97952 Nf2-201ENSMUST00000053079 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Scn1bP97952 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Scn1bP97952 Setd1b-204ENSMUST00000163030 8857 ntAPPRIS P2 TSL 5 BASIC14.15□□□□□ -0.14
Scn1bP97952 Pcdhga8-201ENSMUST00000066149 4730 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Scn1bP97952 Dnmt3b-210ENSMUST00000109774 4320 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
Scn1bP97952 Myh14-201ENSMUST00000048102 6457 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Scn1bP97952 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Scn1bP97952 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC14.15□□□□□ -0.14
Scn1bP97952 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Scn1bP97952 Spcs1-207ENSMUST00000228767 1008 ntBASIC14.15□□□□□ -0.14
Scn1bP97952 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Scn1bP97952 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Scn1bP97952 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Scn1bP97952 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Scn1bP97952 Tc2n-203ENSMUST00000160830 2005 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Scn1bP97952 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Scn1bP97952 Ldlrap1-201ENSMUST00000037828 6549 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Scn1bP97952 9330182L06Rik-201ENSMUST00000069538 4688 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Scn1bP97952 Vash1-201ENSMUST00000021681 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Scn1bP97952 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Scn1bP97952 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Scn1bP97952 Leng8-201ENSMUST00000037472 5105 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Scn1bP97952 Ppp2r5e-205ENSMUST00000220035 3135 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Scn1bP97952 Abi2-201ENSMUST00000052332 5768 ntTSL 1 (best) BASIC14.15□□□□□ -0.15
Scn1bP97952 Syt1-201ENSMUST00000064054 4745 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
Scn1bP97952 Smoc2-201ENSMUST00000024660 2832 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Scn1bP97952 Gins2-201ENSMUST00000034278 3900 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Scn1bP97952 Slc35b2-202ENSMUST00000223987 1766 ntBASIC14.14□□□□□ -0.15
Scn1bP97952 Zhx3-203ENSMUST00000109460 4480 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Scn1bP97952 4921539H07Rik-202ENSMUST00000200072 1665 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Scn1bP97952 Mocos-201ENSMUST00000068006 2884 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Scn1bP97952 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Scn1bP97952 Grik4-202ENSMUST00000114865 5887 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Scn1bP97952 Otop3-202ENSMUST00000106543 2369 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Scn1bP97952 Josd1-201ENSMUST00000023061 3394 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Scn1bP97952 Cyp2u1-201ENSMUST00000106337 4378 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Scn1bP97952 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC14.14□□□□□ -0.15
Scn1bP97952 Gm715-201ENSMUST00000117865 831 ntBASIC14.14□□□□□ -0.15
Scn1bP97952 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC14.14□□□□□ -0.15
Scn1bP97952 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC14.14□□□□□ -0.15
Scn1bP97952 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Scn1bP97952 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC14.14□□□□□ -0.15
Scn1bP97952 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC14.14□□□□□ -0.15
Scn1bP97952 Gm27011-201ENSMUST00000182352 972 ntBASIC14.14□□□□□ -0.15
Scn1bP97952 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
Scn1bP97952 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Scn1bP97952 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Scn1bP97952 Scamp1-201ENSMUST00000022197 4259 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Scn1bP97952 Tcf19-202ENSMUST00000160885 1732 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Scn1bP97952 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Scn1bP97952 Mbp-203ENSMUST00000075372 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Scn1bP97952 Map3k9-202ENSMUST00000222322 3303 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Scn1bP97952 Tchp-201ENSMUST00000094441 2882 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Scn1bP97952 Ccno-201ENSMUST00000038404 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Scn1bP97952 Kif7-204ENSMUST00000184137 4093 ntAPPRIS P3 TSL 5 BASIC14.14□□□□□ -0.15
Scn1bP97952 Nlrx1-203ENSMUST00000169651 3621 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Scn1bP97952 Csdc2-201ENSMUST00000038757 2490 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Scn1bP97952 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Scn1bP97952 Gm10605-202ENSMUST00000183019 3198 ntBASIC14.14□□□□□ -0.15
Scn1bP97952 Foxa1-201ENSMUST00000044380 3191 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Scn1bP97952 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Scn1bP97952 Cyp2a5-201ENSMUST00000005685 2013 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 33.7 ms