Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.11
ABCA4P78363 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
ABCA4P78363 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
ABCA4P78363 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
ABCA4P78363 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
ABCA4P78363 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.11
ABCA4P78363 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC15.77■□□□□ 0.11
ABCA4P78363 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC15.77■□□□□ 0.11
ABCA4P78363 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC15.77■□□□□ 0.11
ABCA4P78363 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC15.77■□□□□ 0.11
ABCA4P78363 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.11
ABCA4P78363 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
ABCA4P78363 AL591684.3-201ENST00000605187 298 ntBASIC15.77■□□□□ 0.11
ABCA4P78363 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
ABCA4P78363 PMS2P7-201ENST00000506558 1336 ntBASIC15.76■□□□□ 0.11
ABCA4P78363 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
ABCA4P78363 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
ABCA4P78363 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
ABCA4P78363 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
ABCA4P78363 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
ABCA4P78363 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
ABCA4P78363 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
ABCA4P78363 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC15.76■□□□□ 0.11
ABCA4P78363 AF186996.4-201ENST00000467186 377 ntBASIC15.76■□□□□ 0.11
ABCA4P78363 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
ABCA4P78363 AC009065.1-201ENST00000564055 1225 ntBASIC15.76■□□□□ 0.11
ABCA4P78363 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC15.76■□□□□ 0.11
ABCA4P78363 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
ABCA4P78363 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
ABCA4P78363 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC15.76■□□□□ 0.11
ABCA4P78363 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
ABCA4P78363 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC15.76■□□□□ 0.11
ABCA4P78363 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
ABCA4P78363 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
ABCA4P78363 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC15.76■□□□□ 0.11
ABCA4P78363 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
ABCA4P78363 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
ABCA4P78363 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
ABCA4P78363 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
ABCA4P78363 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
ABCA4P78363 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC15.75■□□□□ 0.11
ABCA4P78363 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
ABCA4P78363 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
ABCA4P78363 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
ABCA4P78363 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC15.75■□□□□ 0.11
ABCA4P78363 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC15.75■□□□□ 0.11
ABCA4P78363 AC140113.2-201ENST00000604370 208 ntBASIC15.75■□□□□ 0.11
ABCA4P78363 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
ABCA4P78363 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC15.75■□□□□ 0.11
ABCA4P78363 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC15.75■□□□□ 0.11
ABCA4P78363 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC15.75■□□□□ 0.11
ABCA4P78363 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
ABCA4P78363 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
ABCA4P78363 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC15.75■□□□□ 0.11
ABCA4P78363 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
ABCA4P78363 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
ABCA4P78363 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
ABCA4P78363 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
ABCA4P78363 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
ABCA4P78363 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
ABCA4P78363 DDT-203ENST00000403754 569 ntTSL 3 BASIC15.75■□□□□ 0.11
ABCA4P78363 DDT-206ENST00000430101 573 ntTSL 2 BASIC15.75■□□□□ 0.11
ABCA4P78363 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC15.75■□□□□ 0.11
ABCA4P78363 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC15.75■□□□□ 0.11
ABCA4P78363 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
ABCA4P78363 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC15.75■□□□□ 0.11
ABCA4P78363 REEP1-209ENST00000541910 969 ntTSL 2 BASIC15.75■□□□□ 0.11
ABCA4P78363 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC15.75■□□□□ 0.11
ABCA4P78363 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC15.75■□□□□ 0.11
ABCA4P78363 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
ABCA4P78363 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC15.75■□□□□ 0.11
ABCA4P78363 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
ABCA4P78363 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
ABCA4P78363 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
ABCA4P78363 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
ABCA4P78363 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC15.75■□□□□ 0.11
ABCA4P78363 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
ABCA4P78363 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
ABCA4P78363 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
ABCA4P78363 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
ABCA4P78363 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
ABCA4P78363 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
ABCA4P78363 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
ABCA4P78363 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC15.74■□□□□ 0.11
ABCA4P78363 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC15.74■□□□□ 0.11
ABCA4P78363 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC15.74■□□□□ 0.11
ABCA4P78363 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
ABCA4P78363 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
ABCA4P78363 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
ABCA4P78363 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
ABCA4P78363 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
ABCA4P78363 AC005082.1-201ENST00000413042 2259 ntBASIC15.74■□□□□ 0.11
ABCA4P78363 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
ABCA4P78363 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
ABCA4P78363 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
ABCA4P78363 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
ABCA4P78363 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC15.74■□□□□ 0.11
ABCA4P78363 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
ABCA4P78363 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
ABCA4P78363 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms