Protein–RNA interactions for Protein: Q8K445

Clrn1, Clarin-1, mousemouse

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn1Q8K445 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Clrn1Q8K445 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
Clrn1Q8K445 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
Clrn1Q8K445 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Clrn1Q8K445 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC21.38■■□□□ 1.01
Clrn1Q8K445 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Clrn1Q8K445 AC154454.1-201ENSMUST00000225253 216 ntBASIC21.37■■□□□ 1.01
Clrn1Q8K445 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Clrn1Q8K445 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Clrn1Q8K445 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC21.35■■□□□ 1.01
Clrn1Q8K445 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
Clrn1Q8K445 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Clrn1Q8K445 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
Clrn1Q8K445 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Clrn1Q8K445 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
Clrn1Q8K445 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Clrn1Q8K445 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Clrn1Q8K445 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Clrn1Q8K445 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC21.33■■□□□ 1.01
Clrn1Q8K445 Gm45364-201ENSMUST00000210883 159 ntBASIC21.33■■□□□ 1.01
Clrn1Q8K445 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Clrn1Q8K445 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Clrn1Q8K445 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC21.32■■□□□ 1
Clrn1Q8K445 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC21.32■■□□□ 1
Clrn1Q8K445 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC21.32■■□□□ 1
Clrn1Q8K445 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC21.32■■□□□ 1
Clrn1Q8K445 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
Clrn1Q8K445 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC21.31■■□□□ 1
Clrn1Q8K445 Gm6311-201ENSMUST00000073790 878 ntBASIC21.31■■□□□ 1
Clrn1Q8K445 Gm12818-201ENSMUST00000117562 1349 ntBASIC21.3■■□□□ 1
Clrn1Q8K445 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Clrn1Q8K445 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Clrn1Q8K445 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Clrn1Q8K445 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Clrn1Q8K445 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Clrn1Q8K445 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Clrn1Q8K445 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC21.29■■□□□ 1
Clrn1Q8K445 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC21.29■■□□□ 1
Clrn1Q8K445 Gm9812-201ENSMUST00000061934 968 ntBASIC21.29■■□□□ 1
Clrn1Q8K445 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Clrn1Q8K445 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Clrn1Q8K445 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC21.28■■□□□ 1
Clrn1Q8K445 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Clrn1Q8K445 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Clrn1Q8K445 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC21.28■■□□□ 1
Clrn1Q8K445 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC21.28■■□□□ 1
Clrn1Q8K445 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC21.28■■□□□ 1
Clrn1Q8K445 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC21.28■■□□□ 1
Clrn1Q8K445 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Clrn1Q8K445 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC21.27■■□□□ 1
Clrn1Q8K445 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
Clrn1Q8K445 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC21.27■■□□□ 1
Clrn1Q8K445 Pkd1-207ENSMUST00000228550 1050 ntBASIC21.27■■□□□ 1
Clrn1Q8K445 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC21.27■■□□□ 1
Clrn1Q8K445 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
Clrn1Q8K445 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Clrn1Q8K445 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
Clrn1Q8K445 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Clrn1Q8K445 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
Clrn1Q8K445 AC122317.2-201ENSMUST00000218708 1248 ntBASIC21.26■□□□□ 0.99
Clrn1Q8K445 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Clrn1Q8K445 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Clrn1Q8K445 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Clrn1Q8K445 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC21.25■□□□□ 0.99
Clrn1Q8K445 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Clrn1Q8K445 Gm5987-201ENSMUST00000196433 1151 ntBASIC21.25■□□□□ 0.99
Clrn1Q8K445 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Clrn1Q8K445 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Clrn1Q8K445 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Clrn1Q8K445 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Clrn1Q8K445 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Clrn1Q8K445 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Clrn1Q8K445 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Clrn1Q8K445 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC21.24■□□□□ 0.99
Clrn1Q8K445 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Clrn1Q8K445 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Clrn1Q8K445 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Clrn1Q8K445 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
Clrn1Q8K445 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Clrn1Q8K445 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Clrn1Q8K445 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Clrn1Q8K445 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC21.21■□□□□ 0.99
Clrn1Q8K445 AC153911.1-201ENSMUST00000220378 758 ntBASIC21.21■□□□□ 0.99
Clrn1Q8K445 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.99
Clrn1Q8K445 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Clrn1Q8K445 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Clrn1Q8K445 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Clrn1Q8K445 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Clrn1Q8K445 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Clrn1Q8K445 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC21.18■□□□□ 0.98
Clrn1Q8K445 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
Clrn1Q8K445 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Clrn1Q8K445 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Clrn1Q8K445 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC21.18■□□□□ 0.98
Clrn1Q8K445 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Clrn1Q8K445 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Clrn1Q8K445 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Clrn1Q8K445 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Clrn1Q8K445 Gm42699-201ENSMUST00000198104 1657 ntBASIC21.17■□□□□ 0.98
Clrn1Q8K445 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC21.17■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 13.1 ms